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View Structure Prediction Details

Protein: gi|115478460, gi...
Organism: Oryza sativa Japonica Group
Length: 604 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115478460, gi....

Description E-value Query
Range
Subject
Range
gi|82469919 - gi|82469919|gb|ABB77210.1| EMF2 [Dendrocalamus latiflorus]
1012.0 [0..1] [604..27]
gi|62275661 - gi|62275661|gb|AAX78232.1| embryonic flower 2 [Triticum aestivum]
966.0 [0..3] [603..29]
gi|66796111 - gi|66796111|dbj|BAD99131.1| HvEMF2b [Hordeum vulgare]
954.0 [0..1] [602..27]
gi|85062577 - gi|85062577|gb|ABC69154.1| EMF-like [Zea mays]
941.0 [0..3] [602..29]
gi|35187161 - gi|35187161|gb|AAQ84239.1| EMF protein [Oryza sativa]
870.0 [0..1] [603..27]
gi|116317892 - gi|116317892|emb|CAH65920.1| OSIGBa0102O13.11 [Oryza sativa (indica cultivar-group)]
gi|222628350, gi... - gi|50930071|ref|XP_474563.1| OSJNBb0028M18.7 [Oryza sativa (japonica cultivar-group)], gi|38345644|e...
867.0 [0..1] [603..1]
EMF2_ARATH - Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana GN=EMF2 PE=1 SV=2
769.0 [0..1] [595..21]

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Predicted Domain #1
Region A:
Residues: [1-73]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCRHQPRARL SPDEQLAAEE SFALYCKPVE LYNIIQRRSI KNPAFLQRCL LYKIHARRKK  60
   61 RSLITISLSG GTN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.762 N/A N/A a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View Download 0.751 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.737 N/A N/A a.237.1 Description not found.
View Download 0.696 N/A N/A a.50.1 Anaphylotoxins (complement system)
View Download 0.689 N/A N/A a.4.1 Homeodomain-like
View Download 0.638 N/A N/A a.4.1 Homeodomain-like
View Download 0.580 N/A N/A a.4.5 "Winged helix" DNA-binding domain

Predicted Domain #2
Region A:
Residues: [74-283]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KELRAQNIFP LYVLLARPTN NVSLEGHSPI YRFSRACLLT SFHEFGNKDY TEATFVIPDV  60
   61 KNLATSRACS LNIILISCGR AEQTFDDNNC SGNHVEGSTL QKLEGKCFWG KIPIDLLASS 120
  121 LGNCVSLSLG HTVEMSSTVE MTPSFLEPKF LEDDSCLTFC SQKVDATGSF QLQVSISAQE 180
  181 AGAKDMSESP YSVYSYNDVP PSSLTHIIRL 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [284-446]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSGNVLFNYK YYNNTMQKTE VTEDFSCPFC LVPCGSFKGL GCHLNASHDL FHYEFWISEE  60
   61 CQAVNVSLKT DSWRTELLAE GVDPRHQTFS YRSRFKKRKR VEISSDKIRH VHPHIVDSGS 120
  121 PEDAQAGSED DYVQRENGSS VAHASVDPAN SLHGSNLSAP TVL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [447-604]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QFGKTRKLSV ERADPRNRQL LQKRQFFHSH RAQPMALEQV FSDRDSEDEV DDDIADFEDR  60
   61 RMLDDFVDVT KDEKLIMHMW NSFVRKQRVL ADGHIPWACE AFSQFHGQEL VQNPALLWCW 120
  121 RFFMVKLWNH SLLDARAMNA CNTILEGYLN GSSDPKKN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle