| Protein: | gi|215736944, gi... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 619 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215736944, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
351.0 | [0..2] | [594..1] |
|
|
338.0 | [0..17] | [612..15] |
|
|
337.0 | [0..22] | [596..2] |
|
|
335.0 | [0..17] | [612..15] |
|
Region A: Residues: [1-306] |
1 11 21 31 41 51
| | | | | |
1 MVKIVTYNVN GLRPRVAQHG SLRRLLDALD ADIICFQETK LSRQDLSGDV IMAEGYEAFI 60
61 SCNRSSKGRG AYSGVATFCR VTSAFSSQEV ALPVAAEEGF TGLQETAKNS ETIGDFVLVT 120
121 PVEEEGLGEV TKEELLKVDN EGRCVITDHG HFVLFNIYGP AVEEDDIERV RFKLLFYKIL 180
181 QRRWEHLLAL GKRVFVVGDL NIAPSSIDRC DAQPGFEKQT FRKWLRSMLR EHGGPFFDAF 240
241 RSKHPERVGA YTCFNQKVGA EVYNYGSRID HILISGACFH HCGSVDDHSI FPCHVEECEI 300
301 MDHFRR
|
| Detection Method: |  |
| Confidence: | 82.0 |
| Match: | 1de8B |
| Description: | DNA repair endonuclease Hap1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [307-389] |
1 11 21 31 41 51
| | | | | |
1 GNSENMSMWK GGRSSKLEGS DHIPVYIVLN EIPELPVHNT PSSAARYLPE IRGRQQSIVS 60
61 FLRKGMIYEH KDAMSMDRAD ESC
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.649 | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.597 | d.242.1 | Description not found. |
| View | Download | 0.552 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.552 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.552 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.535 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.535 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.495 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.415 | a.2.3 | Chaperone J-domain |
| View | Download | 0.409 | a.4.1 | Homeodomain-like |
|
Region A: Residues: [390-534] |
1 11 21 31 41 51
| | | | | |
1 CGGGLERKAI YKEEPPTDIA KFSKGNDLHS VIKRKIRDQL LNEGSSGNSH NSTAALLATQ 60
61 SRKASFSCSK AVSNKKNKHN LSSQPTIKSF FQQPKSKPGD SSTNSIVTPP DTLHGMDELH 120
121 DPKNDCLPES IQCTTPATED QGNSD
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [535-619] |
1 11 21 31 41 51
| | | | | |
1 VPCSLSTDKC NEATLEWQRI QQRMKMTLPL CKGHHEPCIP RSVKKGSNIG RLFYVCARAQ 60
61 GPASNQEANC GHFQWATVKS KEKRR
|
| Detection Method: | |
| Confidence: | 5.376751 |
| Match: | PF06839.3 |
| Description: | No description for PF06839.3 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
