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View Structure Prediction Details

Protein: gi|50253123, gi|...
Organism: Oryza sativa Japonica Group
Length: 311 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50253123, gi|....

Description E-value Query
Range
Subject
Range
gi|99077994, gi|... - gi|99077994|ref|YP_611253.1| dTDP-glucose 4,6-dehydratase [Silicibacter sp. TM1040], gi|99034937|gb|...
274.0 [0..24] [307..1]

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Predicted Domain #1
Region A:
Residues: [1-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVATNGSSS STSESAETAQ SQAYKFLIYG RTGWIGGLLG QLCAARGIPF AYGAGRLENR  60
   61 AQLETDIDEV APTHVFNAAG VTGRPNVDWC ETHRTETIRA NVCGTLTLAD VCRARGLVLI 120
  121 NYATGCIFEY DAGHQLGTGI GFKEEDTPNF VGSFYSKTKA MVEELLKNYE NVCTLRVRMP 180
  181 ISSDLSNPRN FITKIARYDK VVDIPNSMTI LDELLPISIE MAKRNLTGIW NFTNPGVVSH 240
  241 NEILEMYRDY IDPNFSWKNF TLEEQAKVIV APRSNNELDC TKLKAEFPEL LSIKDSLVRY 300
  301 VFKPNQKTSK A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.0
Match: 1g1aA
Description: dTDP-glucose 4,6-dehydratase (RmlB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.26736023026862 bayes_pls_golite062009
oxidoreductase activity 0.68812524232244 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle