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View Structure Prediction Details

Protein: gi|222622995, gi...
Organism: Oryza sativa Japonica Group
Length: 314 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|222622995, gi....

Description E-value Query
Range
Subject
Range
gi|18176020, gi|... - gi|22326624|ref|NP_196231.2| chaperone protein dnaJ-related [Arabidopsis thaliana], gi|22136730|gb|A...
366.0 [0..46] [314..44]

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Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYCLAAPPA AAAPAAPAAR RASSFLFVVS VPPPTLWGRV TGGAVSAQRL VRRRCSSAGE  60
   61 PRAAGDGGLS SFCIIEGPET IQDFVQMQSQ EIQDNIRSRR NKIFLLMEEV RRLRVQQRIR 120
  121 TSESRGASSE ESEMPEIPSS IPFLPNTSPK TMKQLYLTSF SFITGIIFFG GLIAPVLELK 180
  181 LGLGG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [186-314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSYEDFIRTM HLPLQLSQVD PIVASFSGGA VGVISALMLV EIRNVRQQEK KRCTYCHGTG  60
   61 YLPCARCSAS GMLLNSKSFS LSCDNGHNMW STTERCPNCS GAGKVMCPTC LCTGTAMASE 120
  121 HDPRIDPFD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.522879
Match: 1nltA
Description: The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle