YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|222622995, gi...
Organism: Oryza sativa Japonica Group
Length: 314 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|222622995, gi....

Description E-value Query
Range
Subject
Range
gi|18176020, gi|... - gi|22326624|ref|NP_196231.2| chaperone protein dnaJ-related [Arabidopsis thaliana], gi|22136730|gb|A...
366.0 [0..46] [314..44]

Back

Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYCLAAPPA AAAPAAPAAR RASSFLFVVS VPPPTLWGRV TGGAVSAQRL VRRRCSSAGE  60
   61 PRAAGDGGLS SFCIIEGPET IQDFVQMQSQ EIQDNIRSRR NKIFLLMEEV RRLRVQQRIR 120
  121 TSESRGASSE ESEMPEIPSS IPFLPNTSPK TMKQLYLTSF SFITGIIFFG GLIAPVLELK 180
  181 LGLGG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [186-314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSYEDFIRTM HLPLQLSQVD PIVASFSGGA VGVISALMLV EIRNVRQQEK KRCTYCHGTG  60
   61 YLPCARCSAS GMLLNSKSFS LSCDNGHNMW STTERCPNCS GAGKVMCPTC LCTGTAMASE 120
  121 HDPRIDPFD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.522879
Match: 1nltA
Description: The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle