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View Structure Prediction Details

Protein: gi|50252660, gi|...
Organism: Oryza sativa Japonica Group
Length: 799 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50252660, gi|....

Description E-value Query
Range
Subject
Range
AVPX_ARATH - Pyrophosphate-energized membrane proton pump 3 OS=Arabidopsis thaliana GN=AVPL2 PE=3 SV=1
941.0 [0..1] [799..2]

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Predicted Domain #1
Region A:
Residues: [1-58]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEADMENGR LYPERPRTFS TVRTKSSLPP IFRVLMRINP RAFIVLLLLV FSGVLYVG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [59-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASTSPIVLFV FCICTLSLFF SLYLTKWVLA KDEGPPEMSE ISDAIRDGAE GFFRTQYGTI  60
   61 SKMACILALV ILGIYLFRST TP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [141-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQEASGVGRT TSAYITVASF LLGALCSGIA GFVGMWVSVR ANVRVSSAAR RSAREALQIA  60
   61 VRAGGFSAIV VVGMAVFGVA ILYATFYVWL EVDSP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [236-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSMKVTDLPL LLVGYGFGAS FVALFAQLGG GIYTKAADVG ADLVGKVEQG IPEDDPRNPA  60
   61 VIADLVGDNV GDCAARGADL FESIAAEIIS AMILGGTMAQ RCKIEDPSGF ILFPLVVHSF 120
  121 DLVISSVGIL SIRGTRDSGL ISPIEDPMAI MQKGYSITIL LAVVTFGVST RWLLYTEQAP 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [416-540]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAWLNFALCG LVGIITAYAF VWISKYYTDY KHEPVRLLAL SSSTGHGTNI IAGVSLGLES  60
   61 TALPVLVISV AIISAFWLGH TSGLVDESGN PTGGLFGTAV ATMGMLSTAA YVLTMDMFGP 120
  121 IADNA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [541-620]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGIVEMSQQP ESVREITDIL DAVGNTTKAT TKGFAIGSAA LASFLLFSAY MDEVAAFAQL  60
   61 PFKEVDIAIP EVFVGGLLGS 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [621-799]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIFLFSAWA CSAVGRTAQE VVNEVRRQFI ERPGIMDYNE KPDYGRCVAI VASASLREMI  60
   61 RPGALAIISP MAVGIIFRML GHATGRPLLG AKVVAAMLMF ATVSGILMAL FLNTAGGAWD 120
  121 NAKKYIETGA LGGKGSESHK AAVTGDTVGD PFKDTAGPSI HVLIKMLATI TLVMAPIFL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle