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View Structure Prediction Details

Protein: gi|50252660, gi|...
Organism: Oryza sativa Japonica Group
Length: 799 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50252660, gi|....

Description E-value Query
Range
Subject
Range
AVPX_ARATH - Pyrophosphate-energized membrane proton pump 3 OS=Arabidopsis thaliana GN=AVPL2 PE=3 SV=1
941.0 [0..1] [799..2]

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Predicted Domain #1
Region A:
Residues: [1-58]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEADMENGR LYPERPRTFS TVRTKSSLPP IFRVLMRINP RAFIVLLLLV FSGVLYVG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [59-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASTSPIVLFV FCICTLSLFF SLYLTKWVLA KDEGPPEMSE ISDAIRDGAE GFFRTQYGTI  60
   61 SKMACILALV ILGIYLFRST TP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [141-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQEASGVGRT TSAYITVASF LLGALCSGIA GFVGMWVSVR ANVRVSSAAR RSAREALQIA  60
   61 VRAGGFSAIV VVGMAVFGVA ILYATFYVWL EVDSP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [236-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSMKVTDLPL LLVGYGFGAS FVALFAQLGG GIYTKAADVG ADLVGKVEQG IPEDDPRNPA  60
   61 VIADLVGDNV GDCAARGADL FESIAAEIIS AMILGGTMAQ RCKIEDPSGF ILFPLVVHSF 120
  121 DLVISSVGIL SIRGTRDSGL ISPIEDPMAI MQKGYSITIL LAVVTFGVST RWLLYTEQAP 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [416-540]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAWLNFALCG LVGIITAYAF VWISKYYTDY KHEPVRLLAL SSSTGHGTNI IAGVSLGLES  60
   61 TALPVLVISV AIISAFWLGH TSGLVDESGN PTGGLFGTAV ATMGMLSTAA YVLTMDMFGP 120
  121 IADNA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [541-620]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGIVEMSQQP ESVREITDIL DAVGNTTKAT TKGFAIGSAA LASFLLFSAY MDEVAAFAQL  60
   61 PFKEVDIAIP EVFVGGLLGS 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [621-799]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIFLFSAWA CSAVGRTAQE VVNEVRRQFI ERPGIMDYNE KPDYGRCVAI VASASLREMI  60
   61 RPGALAIISP MAVGIIFRML GHATGRPLLG AKVVAAMLMF ATVSGILMAL FLNTAGGAWD 120
  121 NAKKYIETGA LGGKGSESHK AAVTGDTVGD PFKDTAGPSI HVLIKMLATI TLVMAPIFL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle