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View Structure Prediction Details

Protein: scra-PC
Organism: Drosophila melanogaster
Length: 616 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for scra-PC.

Description E-value Query
Range
Subject
Range
gi|70878103 - gi|70878103|gb|EAN91386.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71648919 - gi|71648919|ref|XP_813237.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
294.0 [0..3] [609..717]

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Predicted Domain #1
Region A:
Residues: [1-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPFTQHMLE KAEQRSRALG ISNASKFPLV ECSVPSSSAT SASGGDAGVL APRSRSPGGQ  60
   61 SAASGGGKVV TLGKATLEAS PAKPLRHYTA VNKENLDMGI EINITTDKPI GVQVEIQEQE 120
  121 VTDDEEQAEG GALNPLLEAE PVNQPLARLR DTSRSRLQRM GALYSNTDDL SSPIHRTEGQ 180
  181 FHVTTGEEED CGNRSSRQP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [200-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQRLGKLAAL ADTINQWEDD TSHHEVHRLL EAPPPKPHLS SRRAEKGPAP LPPKKDEVDE  60
   61 ASRTKQLKWD PKVLSSLEAQ GFQRRESSTI KHTYDYAKQE EAAPASKVED AVLTAKPPVP 120
  121 QKSTTVSQVA KNFASSAPAP KPAPAPAVSV KSGLVSGRAA LFENKGTGGQ 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [370-527]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQGLRNQKDP CELSLKERMK LFETGNNKAM LPMAPIGSAP SITQIRAEEV KQHLAAMHPV  60
   61 TAAAATTVVA ATKPKQENKL RDKVAALVAN AQSSAETRIK DIDRQRQEDM QIISNRFNKQ 120
  121 KELFDNQPSD SSVAAQARPP APAPSRVVRP MPPPPPPP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [528-616]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAALSPGLAS SKRRSPGDAP TTDEDSKRAR KSHSDRLYPA LSDLDSSGDN CCAAETASAT  60
   61 DDSHQQDEEE TERCAEKCYS CLLFLLCIE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle