YRC Public Data Repository - Protein Structure Prediction

Protein:	TYOBP_MACMU
Organism:	Macaca mulatta
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TYOBP_MACMU.

Description	E-value	Query Range	Subject Range
TYOBP_PANTR - TYRO protein tyrosine kinase-binding protein OS=Pan troglodytes GN=TYROBP PE=3 SV=1	136.0	[0..1]	[113..1]
TYOBP_MOUSE - TYRO protein tyrosine kinase-binding protein OS=Mus musculus GN=Tyrobp PE=1 SV=1	136.0	[0..1]	[113..1]
TYROBP - TYRO protein tyrosine kinase binding protein gi\|123980378, gi... - gi\|61360843\|gb\|AAX41937.1\| TYRO protein tyrosine kinase binding protein [synthetic construct], gi\|61...	136.0	[0..1]	[113..1]
TYOBP_RAT - TYRO protein tyrosine kinase-binding protein OS=Rattus norvegicus GN=Tyrobp PE=3 SV=1	135.0	[0..1]	[113..1]
CD3D_PIG - T-cell surface glycoprotein CD3 delta chain OS=Sus scrofa GN=CD3D PE=2 SV=1	132.0	[0..25]	[113..86]
gi\|16945316, gi\|... - gi\|41386800\|ref\|NP_777052.1\| TYRO protein tyrosine kinase binding protein [Bos taurus], gi\|16945316\|...	132.0	[0..1]	[113..1]
gi\|3450968 - gi\|3450968\|gb\|AAC32617.1\| T-cell surface glycoprotein CD3 gamma chain [Marmota monax]	131.0	[0..21]	[113..56]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGLEPCSRL LLLPLLLAVG GLRPVQAQAQ SDCSCSTVSP GVLAGIVLGD LVLTVLIALA  60
   61 VYFLGRLVPR GRGAAEAATR KQRITETESP YQELQGQRSD VYSDLNTQRP YYK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits