YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|193068837, gi...
Organism:	Escherichia coli E110019
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|193068837, gi....

Description	E-value	Query Range	Subject Range
gi\|13363706, gi\|... - gi\|15833486\|ref\|NP_312259.1\| shikimate kinase I [Escherichia coli O157:H7 str. Sakai], gi\|13363706\|d... gi\|209756656, gi... - gi\|25288011\|pir\|\|F86003 shikimate kinase I [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|12518013, gi\|... - gi\|15803893\|ref\|NP_289929.1\| shikimate kinase I [Escherichia coli O157:H7 EDL933], gi\|12518013\|gb\|AA... gi\|13363706, gi\|... - gi\|15833486\|ref\|NP_312259.1\| shikimate kinase I [Escherichia coli O157:H7], gi\|13363706\|dbj\|BAB37655...	193.0	[0..1]	[225..16]
gi\|237703117, gi... - gi\|237703117\|ref\|ZP_04533598.1\| shikimic acid kinase I [Escherichia sp. 3_2_53FAA], gi\|226902381\|gb\|... gi\|110616770, gi... - gi\|110807222\|ref\|YP_690742.1\| shikimate kinase I [Shigella flexneri 5 str. 8401], gi\|110616770\|gb\|AB... gi\|226839061, gi... - gi\|254038555\|ref\|ZP_04872611.1\| shikimate kinase I [Escherichia sp. 1_1_43], gi\|226839061\|gb\|EEH7108... gi\|91074436, gi\|... - gi\|91212862\|ref\|YP_542848.1\| shikimate kinase I [Escherichia coli UTI89], gi\|91074436\|gb\|ABE09317.1\|... gi\|7428049, gi\|6... - pir\|\|A65134 shikimate kinase (EC 2.7.1.71) I - Escherichia coli (strain K-12), gi\|606324\|gb\|AAA58187... gi\|56480324, gi\|... - gi\|56480324\|ref\|NP_709163.2\| shikimate kinase I [Shigella flexneri 2a str. 301], gi\|56383875\|gb\|AAN4... gi\|606324\|gb\|AAA... - shikimic acid kinase I [Escherichia coli] gi\|1789792, gi\|4... - gi\|49176344\|ref\|YP_026215.1\| shikimate kinase I [Escherichia coli K12], gb\|AAC76415.1\| shikimate kin... gi\|26249984, gi\|... - gi\|26249984\|ref\|NP_756024.1\| shikimate kinase I [Escherichia coli CFT073], gi\|26110413\|gb\|AAN82598.1... gi\|115514782, gi... - gi\|117625658\|ref\|YP_858981.1\| shikimate kinase I [Escherichia coli APEC O1], gi\|115514782\|gb\|ABJ0285... gi\|30043588, gi\|... - gi\|30065326\|ref\|NP_839497.1\| shikimate kinase I [Shigella flexneri 2a str. 2457T], gi\|30043588\|gb\|AA...	192.0	[0..1]	[225..16]
gi\|46128941 - gi\|46128941\|ref\|ZP_00154674.2\| COG0703: Shikimate kinase [Haemophilus influenzae R2846]	160.0	[0..53]	[224..1]
gi\|145641547 - gi\|145641547\|ref\|ZP_01797125.1\| shikimate kinase [Haemophilus influenzae R3021] gi\|145637371, gi... - gi\|145637371\|ref\|ZP_01793031.1\| shikimate kinase [Haemophilus influenzae PittHH], gi\|145269463\|gb\|ED... gi\|145635643, gi... - gi\|145635643\|ref\|ZP_01791340.1\| shikimate kinase [Haemophilus influenzae PittAA], gi\|145267116\|gb\|ED... gi\|144985355, gi... - gi\|145633784\|ref\|ZP_01789508.1\| shikimate kinase [Haemophilus influenzae 3655], gi\|144985355\|gb\|EDJ9... AROK_HAEI8 - Shikimate kinase OS=Haemophilus influenzae (strain 86-028NP) GN=aroK PE=3 SV=1 gi\|229847382, gi... - gi\|229847382\|ref\|ZP_04467483.1\| shikimate kinase [Haemophilus influenzae 7P49H1], gi\|229809708\|gb\|EE... gi\|229811910, gi... - gi\|229845199\|ref\|ZP_04465333.1\| shikimate kinase [Haemophilus influenzae 6P18H1], gi\|229811910\|gb\|EE... gi\|145273838, gi... - gi\|145641547\|ref\|ZP_01797125.1\| shikimate kinase [Haemophilus influenzae R3021], gi\|145273838\|gb\|EDK...	158.0	[0..53]	[224..1]
AROK_HAEIN - Shikimate kinase OS=Haemophilus influenzae GN=aroK PE=3 SV=1 gi\|42630510 - gi\|42630510\|ref\|ZP_00156049.1\| COG0703: Shikimate kinase [Haemophilus influenzae R2866] AROK_HAEIN - Shikimate kinase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=aroK PE=3 ... AROK_HAEIG - Shikimate kinase OS=Haemophilus influenzae (strain PittGG) GN=aroK PE=3 SV=1 gi\|145271102, gi... - gi\|145639734\|ref\|ZP_01795336.1\| shikimate kinase [Haemophilus influenzae PittII], gi\|145271102\|gb\|ED... gi\|144978984, gi... - gi\|145628514\|ref\|ZP_01784314.1\| shikimate kinase [Haemophilus influenzae 22.1-21], gi\|144978984\|gb\|E...	157.0	[0..53]	[224..1]
tr\|L7ZUC9\|L7ZUC9... - Shikimate kinase 1 OS=Serratia marcescens WW4 GN=aroK PE=3 SV=1, Shikimate kinase 1 OS=Serratia marc... tr\|G0BAE2\|G0BAE2... - Shikimate kinase 1 OS=Serratia plymuthica (strain AS9) GN=aroK PE=3 SV=1 AROK_SERP5 - Shikimate kinase 1 OS=Serratia proteamaculans (strain 568) GN=aroK PE=3 SV=1 AROK_YERE8 - Shikimate kinase 1 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) G... gi\|238718924, gi... - gi\|77962687\|ref\|ZP_00826504.1\| COG0703: Shikimate kinase [Yersinia mollaretii ATCC 43969], gi\|238797... tr\|I3ALA5\|I3ALA5... - Shikimate kinase 1 OS=Serratia plymuthica S13 GN=aroK PE=3 SV=1, Shikimate kinase 1 OS=Serratia plym... tr\|D4DYM4\|D4DYM4... - Shikimate kinase 1 OS=Serratia odorifera DSM 4582 GN=aroK PE=3 SV=1 gi\|238698080, gi... - gi\|238763778\|ref\|ZP_04624737.1\| Shikimate kinase 1 [Yersinia kristensenii ATCC 33638], gi\|238698080\|... tr\|S5EM89\|S5EM89... - Shikimate kinase 1 OS=Serratia liquefaciens ATCC 27592 GN=aroK PE=3 SV=1 tr\|G0BS88\|G0BS88... - Shikimate kinase 1 OS=Serratia sp. AS12 GN=aroK PE=3 SV=1 gi\|238751131, gi... - gi\|238751131\|ref\|ZP_04612626.1\| Shikimate kinase 1 [Yersinia rohdei ATCC 43380], gi\|238710609\|gb\|EEQ... tr\|G0C5D3\|G0C5D3... - Shikimate kinase 1 OS=Serratia sp. AS13 GN=aroK PE=3 SV=1	156.0	[0..53]	[225..1]
AROK_YERPE - Shikimate kinase 1 OS=Yersinia pestis GN=aroK PE=3 SV=1 gi\|229706436, gi... - gi\|229836368\|ref\|ZP_04456535.1\| shikimate kinase I [Yersinia pestis Pestoides A], gi\|229706436\|gb\|EE... gi\|229840007, gi... - gi\|229840007\|ref\|ZP_04460166.1\| shikimate kinase I [Yersinia pestis biovar Orientalis str. PEXU2], g... gi\|89105800, gi\|... - gi\|89105800\|ref\|ZP_01178313.1\| COG0703: Shikimate kinase [Yersinia pestis biovar Orientalis str. IP2... AROK_YERPS - Shikimate kinase 1 OS=Yersinia pseudotuberculosis GN=aroK PE=3 SV=1 gi\|166963294, gi... - gi\|167419300\|ref\|ZP_02311053.1\| shikimate kinase [Yersinia pestis biovar Orientalis str. MG05-1020],... gi\|229690398, gi... - gi\|229842088\|ref\|ZP_04462243.1\| shikimate kinase I [Yersinia pestis biovar Orientalis str. India 195... AROK_YERPA - Shikimate kinase 1 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=aroK PE=3 SV=1 gi\|167051469, gi... - gi\|167398965\|ref\|ZP_02304489.1\| shikimate kinase [Yersinia pestis biovar Antiqua str. UG05-0454], gi... AROK_YERPN - Shikimate kinase 1 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=aroK PE=3 SV=1 AROK_YERPY - Shikimate kinase 1 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=aroK PE=3 SV=1 gi\|167425657, gi... - gi\|167425657\|ref\|ZP_02317410.1\| shikimate kinase [Yersinia pestis biovar Mediaevalis str. K1973002],... AROK_YERPB - Shikimate kinase 1 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=aroK PE=3 SV=1 gi\|45440015, gi\|... - gi\|45440015\|ref\|NP_991554.1\| shikimate kinase I [Yersinia pestis biovar Microtus str. 91001], gi\|454... gi\|21960934, gi\|... - gi\|22127803\|ref\|NP_671226.1\| shikimate kinase I [Yersinia pestis KIM], gi\|21960934\|gb\|AAM87477.1\|AE0... gi\|15978256, gi\|... - gi\|218927362\|ref\|YP_002345237.1\| shikimate kinase I [Yersinia pestis CO92], gi\|16120494\|ref\|NP_40380... gi\|150260833, gi... - gi\|150260833\|ref\|ZP_01917561.1\| shikimate kinase I [Yersinia pestis CA88-4125], gi\|149290241\|gb\|EDM4... gi\|165928015, gi... - gi\|165928015\|ref\|ZP_02223847.1\| shikimate kinase [Yersinia pestis biovar Orientalis str. F1991016], ... AROK_YERPS - Shikimate kinase 1 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=aroK PE=3 SV=1 AROK_YERPP - Shikimate kinase 1 OS=Yersinia pestis (strain Pestoides F) GN=aroK PE=3 SV=1 gi\|166213315, gi... - gi\|166213315\|ref\|ZP_02239350.1\| shikimate kinase [Yersinia pestis biovar Antiqua str. B42003004], gi... gi\|165990688, gi... - gi\|166010598\|ref\|ZP_02231496.1\| shikimate kinase [Yersinia pestis biovar Antiqua str. E1979001], gi\|... AROK_YERPG - Shikimate kinase 1 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=aroK PE=3 SV=1 AROK_YERP3 - Shikimate kinase 1 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=aroK PE=3 SV=1	156.0	[0..53]	[225..1]
gi\|238792888, gi... - gi\|77976416\|ref\|ZP_00831906.1\| COG0703: Shikimate kinase [Yersinia intermedia ATCC 29909], gi\|238792... gi\|238758714, gi... - gi\|238758714\|ref\|ZP_04619888.1\| Shikimate kinase 1 [Yersinia aldovae ATCC 35236], gi\|238703011\|gb\|EE...	156.0	[0..53]	[225..1]
AROK_SALEP - Shikimate kinase 1 OS=Salmonella enteritidis PT4 (strain P125109) GN=aroK PE=3 SV=1 gi\|213053390 - gi\|213053390\|ref\|ZP_03346268.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Typh... gi\|213416769 - gi\|213416769\|ref\|ZP_03349913.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Typh... gi\|213426743 - gi\|213426743\|ref\|ZP_03359493.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Typh... AROK_SALDC - Shikimate kinase 1 OS=Salmonella dublin (strain CT_02021853) GN=aroK PE=3 SV=1 gi\|200386502, gi... - gi\|200386502\|ref\|ZP_03213114.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Vircho... gi\|204928467, gi... - gi\|204928467\|ref\|ZP_03219666.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Javian... AROK_SALTY - Shikimate kinase 1 OS=Salmonella typhimurium GN=aroK PE=3 SV=2 AROK_SALG2 - Shikimate kinase 1 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=aroK PE=3 SV=1 AROK_SALSV - Shikimate kinase 1 OS=Salmonella schwarzengrund (strain CVM19633) GN=aroK PE=3 SV=1 AROK_SALA4 - Shikimate kinase 1 OS=Salmonella agona (strain SL483) GN=aroK PE=3 SV=1 gi\|197243708, gi... - gi\|197265453\|ref\|ZP_03165527.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Saintp... AROK_SALPK - Shikimate kinase 1 OS=Salmonella paratyphi A (strain AKU_12601) GN=aroK PE=3 SV=1 AROK_SALPA - Shikimate kinase 1 OS=Salmonella paratyphi A GN=aroK PE=3 SV=1 gi\|168818704, gi... - gi\|205344461\|gb\|EDZ31225.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Weltevrede... AROK_SALNS - Shikimate kinase 1 OS=Salmonella newport (strain SL254) GN=aroK PE=3 SV=1 AROK_SALHS - Shikimate kinase 1 OS=Salmonella heidelberg (strain SL476) GN=aroK PE=3 SV=1 gi\|194470173, gi... - gi\|194470173\|ref\|ZP_03076157.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Kentuc... gi\|16762800 - gi\|16762800\|ref\|NP_458417.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Typhi s... AROK_SALCH - Shikimate kinase 1 OS=Salmonella choleraesuis GN=aroK PE=3 SV=1 gi\|213622640 - gi\|213622640\|ref\|ZP_03375423.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Typh... gi\|214000223 - gi\|214000223\|ref\|ZP_03410958.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Typh... gi\|224469809, gi... - gi\|224585281\|ref\|YP_002639080.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Par... AROK_SALCH - Shikimate kinase 1 OS=Salmonella choleraesuis GN=aroK PE=3 SV=1 AROK_SALTI - Shikimate kinase 1 OS=Salmonella typhi GN=aroK PE=3 SV=2 gi\|238913610 - gi\|238913610\|ref\|ZP_04657447.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Tenn... AROK_SALTY - Shikimate kinase 1 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=aroK PE=3 SV=2 gi\|29144287, gi\|... - gi\|29144287\|ref\|NP_807629.1\| shikimate kinase I [Salmonella enterica subsp. enterica serovar Typhi s... AROK_SALCH - Shikimate kinase 1 OS=Salmonella choleraesuis (strain SC-B67) GN=aroK PE=3 SV=1 AROK_SALTY - Shikimate kinase 1 OS=Salmonella typhimurium GN=aroK PE=3 SV=2 AROK_SALPA - Shikimate kinase 1 OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=aroK PE=3 SV=1 AROK_SALTI - Shikimate kinase 1 OS=Salmonella typhi GN=aroK PE=3 SV=2 gi\|197291497, gi... - gi\|197291497\|gb\|EDY30849.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Schwarzeng... gi\|168241624, gi... - gi\|205339089\|gb\|EDZ25853.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Heidelberg... gi\|168260796, gi... - gi\|205350524\|gb\|EDZ37155.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Hadar str.... gi\|168465249, gi... - gi\|195632225\|gb\|EDX50709.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Newport st... gi\|161505947, gi... - gi\|161505947\|ref\|YP_001573059.1\| shikimate kinase I [Salmonella enterica subsp. arizonae serovar 62:... gi\|167549313, gi... - gi\|205325544\|gb\|EDZ13383.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|205330713, gi... - gi\|205330713\|gb\|EDZ17477.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar 4,[5],12:i... gi\|205333106, gi... - gi\|205333106\|gb\|EDZ19870.1\| shikimate kinase [Salmonella enterica subsp. enterica serovar Kentucky s... lcl\|NC_016856.1_... - [gene=aroK] [protein=shikimate kinase I] [protein_id=YP_005239685.1] [location=complement(3656122..3...	156.0	[0..53]	[225..1]
AROK_ERWCT - Shikimate kinase 1 OS=Erwinia carotovora subsp. atroseptica GN=aroK PE=3 SV=1 gi\|227329157 - gi\|227329157\|ref\|ZP_03833181.1\| shikimate kinase I [Pectobacterium carotovorum subsp. carotovorum WP... gi\|251756822, gi... - gi\|253690244\|ref\|YP_003019434.1\| Shikimate kinase [Pectobacterium carotovorum subsp. carotovorum PC1... AROK_PECAS - Shikimate kinase 1 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=aroK PE=3 SV=... gi\|227112151 - gi\|227112151\|ref\|ZP_03825807.1\| shikimate kinase I [Pectobacterium carotovorum subsp. brasiliensis P... gi\|255054132, gi... - gi\|255054132\|ref\|ZP_05306380.1\| Shikimate kinase [Pectobacterium wasabiae WPP163], gi\|254990129\|gb\|E...	156.0	[0..53]	[225..1]

Back

Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDLFSCQTR WSIEIIFSLT LAISYEVSVH VLRRSLSEAG LSLTNSLSST EKMAEKRNIF  60
   61 LVGPMGAGKS TIGRQLAQQL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.07
Match:	1tueA
Description:	The X-ray Structure of the Papillomavirus Helicase in Complex with its Molecular Matchmaker E2
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [81-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NMEFYDSDQE IEKRTGADVG WVFDLEGEEG FRDREEKVIN ELTEKQGIVL ATGGGSVKSR  60
   61 ETRNRLSARG VVVYLETTIE KQLARTQRDK KRPLLHVETP PREVLEALAN ERNPLYEEIA 120
  121 DVTIRTDDQS AKVVANQIIH MLESN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.09691
Match:	1kagA
Description:	Shikimate kinase (AroK)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: