YRC Public Data Repository - Protein Structure Prediction

Protein:	AT18A_ARATH
Organism:	Arabidopsis thaliana
Length:	425 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AT18A_ARATH.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	514.0	[0..5]	[424..1187]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	501.0	[0..2]	[425..622]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	499.0	[0..2]	[425..1044]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	494.0	[0..5]	[423..1185]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	492.0	[0..6]	[425..857]
gi\|116200089, gi... - gi\|88179479\|gb\|EAQ86947.1\| hypothetical protein CHGG_08200 [Chaetomium globosum CBS 148.51], gi\|1162...	489.0	[0..2]	[425..965]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ  60
   61 SPLSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.39794
Match:	1p22A
Description:	F-box/WD-repeat protein 1 (beta-TRCP1)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [66-425]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTPNLPVMPP PSVLHLSFNQ DHACFAVGTD RGFRILNCDP FREIFRRDFD RGGGVAVVEM  60
   61 LFRCNILALV GGGPDPQYPP NKVMIWDDHQ GRCIGELSFR SDVRSVRLRR DRIIVVLEQK 120
  121 IFVYNFSDLK LMHQIETIAN PKGLCAVSQG VGSMVLVCPG LQKGQVRIEH YASKRTKFVM 180
  181 AHDSRIACFA LTQDGHLLAT ASSKGTLVRI FNTVDGTLRQ EVRRGADRAE IYSLAFSSNA 240
  241 QWLAVSSDKG TVHVFGLKVN SGSQVKDSSR IAPDATPSSP SSSLSLFKGV LPRYFSSEWS 300
  301 VAQFRLVEGT QYIAAFGHQK NTVVILGMDG SFYRCQFDPV NGGEMSQLEY HNCLKPPSVF 360
  361

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.221849
Match:	2ovpB
Description:	No description for 2ovpB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits