YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51247771
Organism:	Escherichia coli
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51247771.

Description	E-value	Query Range	Subject Range
gi\|218352310, gi... - gi\|218695578\|ref\|YP_002403245.1\| hypothetical protein EC55989_2199 [Escherichia coli 55989], gi\|2183... gi\|75511560, gi\|... - gi\|75511560\|ref\|ZP_00734217.1\| COG3443: Predicted periplasmic or secreted protein [Escherichia coli ... gi\|193071331, gi... - gi\|75215139\|ref\|ZP_00713587.1\| COG3443: Predicted periplasmic or secreted protein [Escherichia coli ...	359.0	[0..1]	[215..2]
gi\|110642079, gi... - gi\|110642079\|ref\|YP_669809.1\| hypothetical protein ECP_1907 [Escherichia coli 536], gi\|110343671\|gb\|... gi\|190906446, gi... - gi\|75239139\|ref\|ZP_00723116.1\| COG3443: Predicted periplasmic or secreted protein [Escherichia coli ...	358.0	[0..1]	[215..2]
gi\|75190985 - gi\|75190985\|ref\|ZP_00704252.1\| COG3443: Predicted periplasmic or secreted protein [Escherichia coli ... gi\|75176967 - gi\|75176967\|ref\|ZP_00697074.1\| COG3443: Predicted periplasmic or secreted protein [Shigella boydii B... gi\|170019697, gi... - gi\|170019697\|ref\|YP_001724651.1\| hypothetical protein EcolC_1672 [Escherichia coli ATCC 8739], gi\|16...	358.0	[0..1]	[215..9]
gi\|110805942, gi... - gi\|110805942\|ref\|YP_689462.1\| hypothetical protein SFV_2018 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24113347, gi\|... - gi\|24113347\|ref\|NP_707857.1\| hypothetical protein SF2020 [Shigella flexneri 2a str. 301], gi\|2405236... gi\|30041662, gi\|... - gi\|30063410\|ref\|NP_837581.1\| hypothetical protein S2117 [Shigella flexneri 2a str. 2457T], gi\|300416... gi\|82543569, gi\|... - gi\|82543569\|ref\|YP_407516.1\| hypothetical protein SBO_1033 [Shigella boydii Sb227], gi\|81244980\|gb\|A...	357.0	[0..1]	[215..2]
EG14049 - zinc and cadmium binding protein, periplasmic / Periplasmic zinc and cadmium binding protein; induc... gi\|89108801, gi\|... - gi\|89108801\|ref\|AP_002581.1\| conserved metal-binding protein [Escherichia coli str. K-12 substr. W31... gi\|169889447, gi... - gi\|170081612\|ref\|YP_001730932.1\| metal-binding protein [Escherichia coli str. K-12 substr. DH10B], g... EG14049 - zinc and cadmium binding protein, periplasmic / Periplasmic zinc and cadmium binding protein; induc... gi\|238901174, gi... - gi\|238901174\|ref\|YP_002926970.1\| conserved metal-binding protein [Escherichia coli BW2952], gi\|23886... YODA_ECOLI - Metal-binding protein yodA precursor (Cadmium-induced protein yodA) - Escherichia coli	356.0	[0..1]	[215..2]
gi\|83569523 - gi\|83569523\|ref\|ZP_00920975.1\| COG3443: Predicted periplasmic or secreted protein [Shigella dysenter...	355.0	[0..1]	[215..9]
gi\|82776340, gi\|... - gi\|82776340\|ref\|YP_402689.1\| hypothetical protein SDY_1033 [Shigella dysenteriae Sd197], gi\|81240488...	354.0	[0..1]	[215..2]
gi\|73855989, gi\|... - gi\|74312512\|ref\|YP_310931.1\| hypothetical protein SSON_2032 [Shigella sonnei Ss046], gi\|73855989\|gb\|...	354.0	[0..1]	[215..2]
gi\|208739151, gi... - gi\|208819028\|ref\|ZP_03259348.1\| metal-binding protein [Escherichia coli O157:H7 str. EC4042], gi\|208... gi\|208816551, gi... - gi\|208816551\|ref\|ZP_03257671.1\| metal-binding protein [Escherichia coli O157:H7 str. EC4045], gi\|208... gi\|208810649, gi... - gi\|208810649\|ref\|ZP_03252525.1\| metal-binding protein [Escherichia coli O157:H7 str. EC4206], gi\|208... gi\|195940362 - gi\|195940362\|ref\|ZP_03085744.1\| hypothetical protein EscherichcoliO157_28865 [Escherichia coli O157:... gi\|217328688, gi... - gi\|217328688\|ref\|ZP_03444769.1\| metal-binding protein [Escherichia coli O157:H7 str. TW14588], gi\|21... gi\|209161284, gi... - gi\|209399884\|ref\|YP_002271086.1\| metal-binding protein [Escherichia coli O157:H7 str. EC4115], gi\|20... gi\|168771628, gi... - gi\|189359657\|gb\|EDU78076.1\| metal-binding protein [Escherichia coli O157:H7 str. EC4486], gi\|1687716... gi\|189366033, gi... - gi\|189366033\|gb\|EDU84449.1\| metal-binding protein [Escherichia coli O157:H7 str. EC4501], gi\|1687639... gi\|209766588, gi... - pir\|\|F85815 hypothetical protein Z3065 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|189355409, gi... - gi\|189355409\|gb\|EDU73828.1\| metal-binding protein [Escherichia coli O157:H7 str. EC4401], gi\|1687576... gi\|188013898, gi... - gi\|188013898\|gb\|EDU52020.1\| metal-binding protein [Escherichia coli O157:H7 str. EC4113], gi\|1687521... gi\|15802406, gi\|... - gi\|15802406\|ref\|NP_288432.1\| hypothetical protein Z3065 [Escherichia coli O157:H7 EDL933], gi\|125160... gi\|189376146, gi... - gi\|189376146\|gb\|EDU94562.1\| metal-binding protein [Escherichia coli O157:H7 str. EC508], gi\|16880175... gi\|15831965, gi\|... - gi\|15831965\|ref\|NP_310738.1\| hypothetical protein ECs2711 [Escherichia coli O157:H7], gi\|13362179\|db... gi\|189371053, gi... - gi\|189371053\|gb\|EDU89469.1\| metal-binding protein [Escherichia coli O157:H7 str. EC869], gi\|16878933... gi\|168783372, gi... - gi\|188999295\|gb\|EDU68281.1\| metal-binding protein [Escherichia coli O157:H7 str. EC4076], gi\|1687833... gi\|254793625, gi... - gi\|254793625\|ref\|YP_003078462.1\| conserved metal-binding protein [Escherichia coli O157:H7 str. TW14... gi\|168777730, gi... - gi\|187767091\|gb\|EDU30935.1\| metal-binding protein [Escherichia coli O157:H7 str. EC4196], gi\|1687777... gi\|15831965, gi\|... - gi\|15831965\|ref\|NP_310738.1\| hypothetical protein ECs2711 [Escherichia coli O157:H7 str. Sakai], gi\|...	354.0	[0..1]	[215..2]
gi\|91211190, gi\|... - gi\|91211190\|ref\|YP_541176.1\| hypothetical protein UTI89_C2172 [Escherichia coli UTI89], gi\|91072764\|... gi\|218558827, gi... - gi\|218558827\|ref\|YP_002391740.1\| hypothetical protein ECS88_2025 [Escherichia coli S88], gi\|21836559...	352.0	[0..1]	[215..2]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIRLYKLAVA LGVFIVSAPA FSHGHHSHGK PLTEVEQKAA NGVFDDANVQ NRTLSDWDGV  60
   61 WQSVYPLLQS GKLDPVFQKK ADADKTKTFA EIKDYYHKGY ATDIEMIGIE DGIVEFHRNN 120
  121 ETTSCKYDYD GYKILTYKSG KKGVRYLFEC KDPESKAPKY IQFSDHIIAP RKSSHFHIFM 180
  181 GNDSQQSLLN EMENWPTYYP YQLSSEEVVE EMMSH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.522879
Match:	1s7dA
Description:	Crystal structure of refined tetragonal crystal of YodA from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.74451860528271	bayes_pls_golite062009
transporter activity	0.771609213367404	bayes_pls_golite062009
lipid binding	0.341999817340849	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: