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View Structure Prediction Details

Protein: gi|162664879, gi...
Organism: Physcomitrella patens subsp. patens
Length: 358 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|162664879, gi....

Description E-value Query
Range
Subject
Range
gi|162680951, gi... - gi|168030717|ref|XP_001767869.1| predicted protein [Physcomitrella patens subsp. patens], gi|1626809...
gi|66841018 - gi|66841018|emb|CAI64584.1| CONSTANS-like 2 [Physcomitrella patens]
270.0 [0..1] [358..1]
gi|41323976 - gi|41323976|gb|AAS00054.1| CONSTANS-like protein CO1 [Populus deltoides]
267.0 [0..3] [358..68]
gi|90657642 - gi|90657642|gb|ABD96940.1| hypothetical protein [Cleome spinosa]
255.0 [0..5] [358..21]
gi|45544881, gi|... - gi|45544883|gb|AAS67377.1| CONSTANS 1 [Lycopersicon esculentum], gi|45544881|gb|AAS67376.1| CONSTANS...
253.0 [0..3] [358..12]
COL2_ARATH - Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1
250.0 [0..3] [358..14]
gi|22854916 - gi|22854916|gb|AAN09813.1| COL1 protein [Brassica nigra]
238.0 [0..3] [358..10]
gi|36789802, gi|... - gi|36789817|dbj|BAC92736.1| Hd1-like protein [Triticum aestivum], gi|36789802|dbj|BAC92734.1| Hd1-li...
237.0 [0..3] [358..25]

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Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKPCDACHV SSAAVFCRAD AAYLCVGCDG KVHGANKLAS RHERVWMCEV CEVAPAVVTC  60
   61 KADAASLCVA CDTDIHSANP LAQRHERVPV TPLFESASPL RGPDF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.221849
Match: 2junA
Description: No description for 2junA was found.

Predicted Domain #2
Region A:
Residues: [106-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CVLVSENGCH DLLKGCEDAS VVEAVSWLLP HPKISTNSII RGSAAADEMG SSPFHDRPFS  60
   61 PKPKKQKVEL PADIFSDVDP FLDLDDATVT GIQPDSLVPV HMPECSEDTD SLA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [219-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSMDPSFTKF PLSAKSGYSY GTSTLTQSIS CSSLDAAVVP DSSLSDISTP YLDSQSSQDM  60
   61 SARLPHQTGG PIDTVDREAR VLRYKEKRQK RKFEKTIRYA SRKAYAESRP RIKGRFAKRT 120
  121 DSDMEQFGSV DSSFGVVPSF 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle