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View Structure Prediction Details

Protein: gi|162664879, gi...
Organism: Physcomitrella patens subsp. patens
Length: 358 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|162664879, gi....

Description E-value Query
Range
Subject
Range
gi|162680951, gi... - gi|168030717|ref|XP_001767869.1| predicted protein [Physcomitrella patens subsp. patens], gi|1626809...
gi|66841018 - gi|66841018|emb|CAI64584.1| CONSTANS-like 2 [Physcomitrella patens]
270.0 [0..1] [358..1]
gi|41323976 - gi|41323976|gb|AAS00054.1| CONSTANS-like protein CO1 [Populus deltoides]
267.0 [0..3] [358..68]
gi|90657642 - gi|90657642|gb|ABD96940.1| hypothetical protein [Cleome spinosa]
255.0 [0..5] [358..21]
gi|45544881, gi|... - gi|45544883|gb|AAS67377.1| CONSTANS 1 [Lycopersicon esculentum], gi|45544881|gb|AAS67376.1| CONSTANS...
253.0 [0..3] [358..12]
COL2_ARATH - Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1
250.0 [0..3] [358..14]
gi|22854916 - gi|22854916|gb|AAN09813.1| COL1 protein [Brassica nigra]
238.0 [0..3] [358..10]
gi|36789802, gi|... - gi|36789817|dbj|BAC92736.1| Hd1-like protein [Triticum aestivum], gi|36789802|dbj|BAC92734.1| Hd1-li...
237.0 [0..3] [358..25]

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Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKPCDACHV SSAAVFCRAD AAYLCVGCDG KVHGANKLAS RHERVWMCEV CEVAPAVVTC  60
   61 KADAASLCVA CDTDIHSANP LAQRHERVPV TPLFESASPL RGPDF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.221849
Match: 2junA
Description: No description for 2junA was found.

Predicted Domain #2
Region A:
Residues: [106-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CVLVSENGCH DLLKGCEDAS VVEAVSWLLP HPKISTNSII RGSAAADEMG SSPFHDRPFS  60
   61 PKPKKQKVEL PADIFSDVDP FLDLDDATVT GIQPDSLVPV HMPECSEDTD SLA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [219-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSMDPSFTKF PLSAKSGYSY GTSTLTQSIS CSSLDAAVVP DSSLSDISTP YLDSQSSQDM  60
   61 SARLPHQTGG PIDTVDREAR VLRYKEKRQK RKFEKTIRYA SRKAYAESRP RIKGRFAKRT 120
  121 DSDMEQFGSV DSSFGVVPSF 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle