| Protein: | gi|190408049 |
| Organism: | Saccharomyces cerevisiae RM11-1a |
| Length: | 1208 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190408049.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..1208] | [1..1208] |
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0.0 | [14..1092] | [15..936] |
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0.0 | [14..1092] | [17..961] |
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0.0 | [4..1087] | [21..947] |
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0.0 | [14..1092] | [14..935] |
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Region A: Residues: [1-161] |
1 11 21 31 41 51
| | | | | |
1 MSLREVTNYE VSFYIPLSYS NRTHKVCKLP NGILALIISD PTDTSSSCSL TVCTGSHNDP 60
61 KDIAGLAHLC EHMILSAGSK KYPDPGLFHT LIAKNNGSQN AFTTGEQTTF YFELPNTQNN 120
121 GEFTFESILD VFASFFKEPL FNPLLISKEI YAIQSEHEGN I
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Region B: Residues: [180-260] |
1 11 21 31 41 51
| | | | | |
1 HPFSRFSTGN IHSLSSIPQL KKIKLKSSLN TYFENNFFGE NITLCIRGPQ SVNILTKLAL 60
61 SKFGDIKPKS AVKERSISIR T
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Region C: Residues: [441-471] |
1 11 21 31 41 51
| | | | | |
1 QSSEDLPMEE CSKLSGILQD DLECLTPPNI F
|
| Detection Method: |  |
| Confidence: | 128.9794 |
| Match: | 1hr6B_ |
| Description: | Mitochondrial processing peptidase (MPP) beta chain |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [162-179] |
1 11 21 31 41 51
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1 SSTTKIFYHA ARILANPD
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Region B: Residues: [261-440] |
1 11 21 31 41 51
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1 RSFRRSKSLK KRQDSSKNDY SDLKTFKILN TTWEKKYKNT MCFQQFPECN SIFINSNKVP 60
61 IMRLLFPVSD KNTRFTKDDI KIYSHLWCEL FGDESPGSLS YYLASKGWLT GCFAFTSEFA 120
121 IGDIGLILEL ELTNSGWENI KRITTIVLNR LLPSFYVMNI DYLITFLKEQ NLIDLVSFLY 180
181
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| Detection Method: | |
| Confidence: | 128.9794 |
| Match: | 1hr6B_ |
| Description: | Mitochondrial processing peptidase (MPP) beta chain |
| Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [472-568] |
1 11 21 31 41 51
| | | | | |
1 KGFKSLIEID DPNIEKYENT KANIQWWTGQ AIKFQNFLKS FMNHDNMRLL LLGNIKSGNI 60
61 FDKMKNKSDI CTDFFYEFEY YTANVHLASD NKFHSNS
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.425 | c.47.1 | Thioredoxin-like |
| View | Download | 0.289 | c.3.1 | FAD/NAD(P)-binding domain |
| View | Download | 0.398 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.300 | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.257 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.253 | d.68.3 | SirA-like |
| View | Download | 0.249 | c.30.1 | PreATP-grasp domain |
| View | Download | 0.235 | a.59.1 | PAH2 domain |
| View | Download | 0.226 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.222 | c.47.1 | Thioredoxin-like |
| View | Download | 0.218 | c.23.4 | Succinyl-CoA synthetase domains |
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Region A: Residues: [569-1011] |
1 11 21 31 41 51
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1 SYEFNFPTGN LFLPDCVSDP LKLQQLFLEC SLKSKFATLR PQIYSEPTRT KPQLVSENQN 60
61 YEMWILKEDP NFASDNKSVV SFEVLGLGIK PSPEATIHLE VLAQALFIIT SSFLYPALRI 120
121 GYTYEIASSS KGNVTLRFTI SGFPEGVFTI VKTFVDTLKL IATDPTFLSK DTLRKARILV 180
181 RNKYKNASSD NCVKLASVGL LIVLEKYIWT LEDRINALEL TELESFEKFC FLFWRNPKHL 240
241 VLFMQGSLEY ADAINRYLNN NFTQHLKISN EGSKPTIRLY PPPSTKDLDQ GTNAFISYNG 300
301 HQDDPNNSIV YFIQTAQRDD IKNLTLTFLT EYLFSLTLVP DLRNKKQIGY IVLGGLRVLT 360
361 DTVGIHITVM SGSSGHNLET RINEYLSYLQ LQVLNRFTEF DFRRILLEPF LNLLKQNSTK 420
421 QFEGSAGPVD LLNEIVANVQ NGD
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
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Region A: Residues: [1012-1121] |
1 11 21 31 41 51
| | | | | |
1 NYTLNNKQMR QHRKVRNKIA EGRLNFQEDH EMIDISFLQK LTLKKYLAFF ESKISIYSAQ 60
61 RSKLSIMITS PMAEKEIASR KMFLQLEAFL KINGFAIKNE DLKKIVEHSK
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.471 | 0.373 | axial cellular bud site selection | a.1.1 | Globin-like |
| View | Download | 0.764 | 0.026 | axial cellular bud site selection | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.403 | 0.023 | axial cellular bud site selection | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.420 | 0.009 | axial cellular bud site selection | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.444 | N/A | N/A | d.58.47 | Hypothetical protein VC0424 |
| View | Download | 0.340 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.317 | N/A | N/A | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.314 | N/A | N/A | d.68.4 | YhbY-like |
| View | Download | 0.313 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.279 | N/A | N/A | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.264 | N/A | N/A | d.155.1 | Pyruvoyl-dependent histidine and arginine decarboxylases |
| View | Download | 0.259 | N/A | N/A | d.212.1 | TolA/TonB C-terminal domain |
| View | Download | 0.251 | N/A | N/A | c.97.1 | Cytidine deaminase-like |
| View | Download | 0.249 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.242 | N/A | N/A | a.54.1 | Domain of early E2A DNA-binding protein, ADDBP |
| View | Download | 0.230 | N/A | N/A | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.227 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.220 | N/A | N/A | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.217 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.212 | N/A | N/A | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.204 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.201 | N/A | N/A | a.118.8 | TPR-like |
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Region A: Residues: [1122-1208] |
1 11 21 31 41 51
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1 GNPILLVKNL FTYFRRRNEV FKLGTVVLQE ILKIIGMNLK QRYGSILGFS SQDGEGQEIE 60
61 KFWNNDTSPI VPLQELPEPN FFRKAAF
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.506 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.586 | a.4.1 | Homeodomain-like |
| View | Download | 0.650 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.578 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.504 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.477 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.445 | a.74.1 | Cyclin-like |
| View | Download | 0.435 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.434 | a.4.1 | Homeodomain-like |
| View | Download | 0.419 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.412 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.404 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.403 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.358 | a.74.1 | Cyclin-like |
| View | Download | 0.349 | a.112.1 | Description not found. |
| View | Download | 0.345 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.334 | d.15.1 | Ubiquitin-like |
| View | Download | 0.327 | c.47.1 | Thioredoxin-like |
| View | Download | 0.325 | a.4.1 | Homeodomain-like |
| View | Download | 0.316 | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.309 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.308 | d.234.1 | Proguanylin |
| View | Download | 0.298 | a.46.1 | Methionine synthase domain |
| View | Download | 0.298 | a.64.1 | Saposin |
| View | Download | 0.294 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.292 | a.4.1 | Homeodomain-like |
| View | Download | 0.289 | a.21.1 | HMG-box |
| View | Download | 0.280 | a.4.12 | TrpR-like |
| View | Download | 0.277 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.277 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.260 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.256 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.249 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.248 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.242 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.241 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.239 | c.47.1 | Thioredoxin-like |
| View | Download | 0.238 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.235 | a.39.1 | EF-hand |
| View | Download | 0.228 | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.226 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.224 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.224 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.217 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.212 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.212 | a.39.1 | EF-hand |
| View | Download | 0.208 | a.101.1 | Uteroglobin-like |
| View | Download | 0.205 | d.53.1 | Ribosomal protein S3 C-terminal domain |
| View | Download | 0.202 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
