YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190405205
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190405205.

Description	E-value	Query Range	Subject Range
gi\|190405205 - gi\|190405205\|gb\|EDV08472.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] NOP6_YEAST - Nucleolar protein 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP6 PE=1 SV=1 gi\|151941794 - gi\|151941794\|gb\|EDN60150.1\| nucleolar protein [Saccharomyces cerevisiae YJM789] NOP6 - Putative RNA-binding protein implicated in ribosome biogenesis; contains an RNA recognition motif (R...	2.0E-67	[1..225]	[1..225]
YGR4_SCHPO - Uncharacterized RNA-binding protein C365.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ... SPBC365.04c - RNA-binding protein	2.0E-58	[10..225]	[17..233]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.002	[22..122]	[103..203]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSEEDKKLT KKQLKAQQFR KSKEEKDQEK DVKKEQAPEG KRPNSAAGND GEEPVKKKRK  60
   61 TRRGRGGKGK NGKKGNRFIV FVGSLPRDIT AVELQNHFKN SSPDQIRLRA DKGIAFLEFD 120
  121 ADKDRTGIQR RMDIALLQHG TLLKEKKINV ELTVGGGGNS QERLEKLKNK NIKLDEERKE 180
  181 RLTKMINDGN QKKIAKTTAT AAQTSGTDNK PVPAGIHPDR AKLLK

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.13
Match:	1fj7A
Description:	Nucleolin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA binding	3.32086587430292	bayes_pls_golite062009
binding	2.84652855524974	bayes_pls_golite062009
nucleic acid binding	2.07488701626356	bayes_pls_golite062009
	1.23676130179002	bayes_pls_golite062009
structural molecule activity	1.11870738570663	bayes_pls_golite062009
protein binding	0.826837409443725	bayes_pls_golite062009
mRNA binding	0.132944695780323	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: