YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|48425401, gi\|...
Organism:	Mycobacterium tuberculosis
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|48425401, gi|....

Description	E-value	Query Range	Subject Range
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	336.0	[0..2]	[263..1141]
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	336.0	[0..3]	[263..1198]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	334.0	[0..3]	[262..993]
gi\|115443476, gi... - gi\|115443476\|ref\|XP_001218545.1\| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624], gi\|1...	333.0	[0..2]	[262..673]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	332.0	[0..2]	[262..888]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	331.0	[0..3]	[262..1364]

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Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPSWSPTQAS GQTVLPFTGI DFRLSPSGVA VDSAGNVYVT SEGMYGRVVK LATGSTGTTV  60
   61 LPFNGLYQPQ GLAVDGAGTV YVTDFNNRVV TLAAGSNNQT VLPFDGLNYP EGLAVDTQGA 120
  121 VYVADRGNNR VVKLAAGSKT QTVLPFTGLN DPDGVAVDNS GNVYVTDTDN NRVVKLEAES 180
  181 NNQVVLPFTD ITAPWGIAVD EAGTVYVTEH NTNQVVKLLA GSTTSTVLPF TGLNTPLAVA 240
  241 VDSDRTVYVA DRGNDRVVKL TSLEHHHHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.39794
Match:	1rwiB
Description:	Extracellular domain of Mycobacterium tuberculosis PknD
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits