YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|164711072, gi...
Organism:	Bacillus anthracis str. A0488
Length:	478 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|164711072, gi....

Description	E-value	Query Range	Subject Range
gi\|65319241, gi\|... - gi\|65319241\|ref\|ZP_00392200.1\| COG1231: Monoamine oxidase [Bacillus anthracis str. A2012], ref\|NP_65...	2.0E-75	[2..478]	[1..477]
gi\|42736998, gi\|... - gi\|42781077\|ref\|NP_978324.1\| amine oxidase, flavin-containing [Bacillus cereus ATCC 10987], gi\|42736...	8.0E-74	[1..478]	[1..478]
gi\|52143492, gi\|... - gi\|52143492\|ref\|YP_083337.1\| amine oxidase, flavin-containing [Bacillus cereus E33L], gi\|51976961\|gb...	5.0E-71	[1..478]	[1..478]
gi\|89207853, gi\|... - gi\|89207853\|ref\|ZP_01186383.1\| Amine oxidase [Bacillus weihenstephanensis KBAB4], gi\|89154208\|gb\|EAR...	6.0E-71	[1..475]	[1..475]
gi\|49328996, gi\|... - gi\|49477440\|ref\|YP_036096.1\| amine oxidase, flavin-containing [Bacillus thuringiensis serovar konkuk...	1.0E-70	[1..478]	[1..478]
gi\|218158786, gi... - gi\|218230829\|ref\|YP_002366645.1\| amine oxidase, flavin-containing [Bacillus cereus B4264], gi\|218158... gi\|228633304, gi... - gi\|229150185\|ref\|ZP_04278407.1\| Amine oxidase [Bacillus cereus m1550], gi\|228633304\|gb\|EEK89911.1\| A... gi\|229127357, gi... - gi\|229127357\|ref\|ZP_04256353.1\| Amine oxidase [Bacillus cereus BDRD-Cer4], gi\|228656190\|gb\|EEL12032.... gi\|29895614, gi\|... - gi\|30020064\|ref\|NP_831695.1\| amine oxidase [flavin-containing] [Bacillus cereus ATCC 14579], gi\|2989... gi\|228674040, gi... - gi\|229109414\|ref\|ZP_04239009.1\| Amine oxidase [Bacillus cereus Rock1-15], gi\|228674040\|gb\|EEL29289.1... gi\|229043714, gi... - gi\|229043714\|ref\|ZP_04191417.1\| Amine oxidase [Bacillus cereus AH676], gi\|228725613\|gb\|EEL76867.1\| A...	1.0E-70	[1..478]	[1..478]
gi\|228900546, gi... - gi\|228900546\|ref\|ZP_04064769.1\| Amine oxidase [Bacillus thuringiensis IBL 4222], gi\|228859097\|gb\|EEN... gi\|75759899, gi\|... - gi\|75759899\|ref\|ZP_00739971.1\| Amine oxidase (flavin-containing) [Bacillus thuringiensis serovar isr...	2.0E-70	[1..478]	[1..478]
gi\|47568324, gi\|... - gi\|47568324\|ref\|ZP_00239026.1\| flavin monoamine oxidase-related protein [Bacillus cereus G9241], gi\|...	4.0E-70	[1..478]	[1..478]

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Predicted Domain #1

Region A:
Residues: [1-478]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQPLTMERM LHIINVGLVK TKNPKQIIIV GAGISGLVAA SLLKEAGHKV TILEANNRIG  60
   61 GRIYTIREPF SRGLYFNAGP MRIPDTHKLT LAYIRKFKLP LNLFINKTAS DIIYTNNIKK 120
  121 RLSIFEKNPS ILGYPILERE KGKTAEELML EVLEPILNYI KKDPNKNWSI VEKKYKAYSL 180
  181 GTFLTEYYSD GAIDMIGVLL DMEAYMGMSL IEVLREMVFF TSTTKYYEIT GGMDALPKAF 240
  241 LSQLNENIFM RYKVEKIIQE NSKVMIQVNH EQTIERFMVT GDVAIVTIPF SALRFVEIQP 300
  301 YNLFSYYKRR AIRELNYIAA TKIAIEFKSR FWEKAGQYGG KSITDLPIRF TYYPSYGIHT 360
  361 PGAATVLASY TWADEALTWD SLPDRERIRY ALKNLAEIYG EIVYSEFVTG TSFSWSKNPY 420
  421 SCGAFTAFEP GQELELFPYI TSPSGKVHFA GEHTTLTHGW MQGAIESGIR VAHEVNEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.045757
Match:	1reoA
Description:	L-amino acid oxidase from Agkistrodon halys pallas
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on NADH or NADPH	2.95445632673053	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	1.61125987248836	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.07245967881566	bayes_pls_golite062009
catalytic activity	1.03127962968326	bayes_pls_golite062009
oxidoreductase activity	0.943208146517927	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	0.681230241795345	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	0.397770205910041	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: