| Protein: | gi|220954206, gi... |
| Organism: | synthetic construct |
| Length: | 281 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220954206, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
260.0 | [0..1] | [279..1] |
|
|
249.0 | [0..1] | [281..1] |
|
|
249.0 | [0..1] | [279..1] |
|
|
234.0 | [0..1] | [280..1] |
|
|
228.0 | [0..1] | [281..19] |
|
|
220.0 | [0..1] | [278..1] |
|
|
210.0 | [0..1] | [183..1] |
|
Region A: Residues: [1-63] |
1 11 21 31 41 51
| | | | | |
1 MVFFTCNICG ESVKKPAVEK HYQTRCRGKD KNVSCMDCLK DFYGEEYVAH IKCISEAQKY 60
61 ASQ
|
| Detection Method: |  |
| Confidence: | 27.154902 |
| Match: | 1wjvA |
| Description: | Solution structure of the N-terminal zinc finger domain of mouse cell growth regulating nucleolar protein LYAR |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.75384162940108 | bayes_pls_golite062009 |
| nucleic acid binding | 1.57776971811162 | bayes_pls_golite062009 |
| DNA binding | 1.44675129642632 | bayes_pls_golite062009 |
| transcription regulator activity | 1.20428473898846 | bayes_pls_golite062009 |
| transcription factor activity | 0.35678698773089 | bayes_pls_golite062009 |
|
Region A: Residues: [64-156] |
1 11 21 31 41 51
| | | | | |
1 SQGFAAKEPR NKNAQKQESW MDIIRSILDS SEYNLTPAVR SAFQKLQSVD NVPRKKAKFE 60
61 NFVGNCMRMP RNQATQVWDI LEKELNKMKE AKQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.556 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.504 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.444 | a.118.1 | ARM repeat |
| View | Download | 0.366 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.356 | a.118.8 | TPR-like |
|
Region A: Residues: [157-281] |
1 11 21 31 41 51
| | | | | |
1 AELARAKAEK IAEIQQKQKA EVEEEAPPKK KAKVETTEDA AAEETSNGVT SDFDWAAQLT 60
61 KIVTKQADGI FLEKLRKKLL KKYAKHLSVE DLNEKQAKKF QKRFDKQLKL ADSLEVEGEI 120
121 VKIAS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.687 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.484 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.465 | N/A | N/A | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.435 | N/A | N/A | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.430 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
