YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|161870963, gi...
Organism:	Neisseria meningitidis 053442
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|161870963, gi....

Description	E-value	Query Range	Subject Range
gi\|11264640 - pir\|\|E82029 methionyl aminopeptidase (EC 3.4.11.18) NMA0337 [imported] - Neisseria meningitidis (str... gi\|15793347, gi\|... - gi\|7379091\|emb\|CAB83640.1\| methionine aminopeptidase [Neisseria meningitidis Z2491], gi\|218767339\|re... gi\|121635748, gi... - gi\|121635748\|ref\|YP_975993.1\| methionine aminopeptidase [Neisseria meningitidis FAM18], gi\|120867454...	290.0	[0..1]	[259..1]
gi\|254492709, gi... - gi\|254492709\|ref\|ZP_05105880.1\| methionine aminopeptidase [Neisseria gonorrhoeae 1291], gi\|226511749... gi\|240127196 - gi\|240127196\|ref\|ZP_04739857.1\| Map [Neisseria gonorrhoeae SK-93-1035] gi\|240126666 - gi\|240126666\|ref\|ZP_04739552.1\| Map [Neisseria gonorrhoeae SK-92-679] gi\|240122485 - gi\|240122485\|ref\|ZP_04735441.1\| Map [Neisseria gonorrhoeae PID332] gi\|59802291, gi\|... - gi\|59802291\|ref\|YP_209003.1\| hypothetical protein NGO1983 [Neisseria gonorrhoeae FA 1090], gi\|597191... gi\|240081833 - gi\|240081833\|ref\|ZP_04726376.1\| Map [Neisseria gonorrhoeae FA19] gi\|240015560 - gi\|240015560\|ref\|ZP_04722100.1\| Map [Neisseria gonorrhoeae FA6140] gi\|240013118 - gi\|240013118\|ref\|ZP_04720031.1\| Map [Neisseria gonorrhoeae DGI18] gi\|239999936 - gi\|239999936\|ref\|ZP_04719860.1\| Map [Neisseria gonorrhoeae 35/02] gi\|240120189 - gi\|240120189\|ref\|ZP_04733151.1\| Map [Neisseria gonorrhoeae PID24-1] gi\|193935038, gi... - gi\|194099748\|ref\|YP_002002883.1\| Map [Neisseria gonorrhoeae NCCP11945], gi\|193935038\|gb\|ACF30862.1\| ... gi\|240116851 - gi\|240116851\|ref\|ZP_04730913.1\| Map [Neisseria gonorrhoeae PID1] gi\|240114650 - gi\|240114650\|ref\|ZP_04728712.1\| Map [Neisseria gonorrhoeae PID18] gi\|240114111 - gi\|240114111\|ref\|ZP_04728601.1\| Map [Neisseria gonorrhoeae MS11]	287.0	[0..1]	[259..1]
gi\|196156190, gi... - gi\|88796890\|ref\|ZP_01112521.1\| methionine aminopeptidase; contains a divalent metal, usually cobalt ...	285.0	[0..5]	[258..4]
gi\|104783196, gi... - gi\|95112183\|emb\|CAK16910.1\| methionine aminopeptidase [Pseudomonas entomophila L48], gi\|104783196\|re... gi\|95112183 - gi\|95112183\|emb\|CAK16910.1\| methionine aminopeptidase [Pseudomonas entomophila L48]	282.0	[0..5]	[259..4]
gi\|82737201, gi\|... - gi\|82737201\|ref\|ZP_00900053.1\| Peptidase M24A, methionine aminopeptidase, subfamily 1 [Pseudomonas p...	282.0	[0..5]	[259..4]
tr\|I7C9E7\|I7C9E7... - Methionine aminopeptidase OS=Pseudomonas putida (strain DOT-T1E) GN=map PE=3 SV=1 tr\|E4RGF7\|E4RGF7... - Methionine aminopeptidase OS=Pseudomonas putida (strain BIRD-1) GN=map PE=3 SV=1 gi\|24983070, gi\|... - gi\|26988322\|ref\|NP_743747.1\| methionine aminopeptidase [Pseudomonas putida KT2440], gi\|24983070\|gb\|A...	281.0	[0..5]	[259..4]
gi\|66044590, gi\|... - gi\|66044590\|ref\|YP_234431.1\| methionine aminopeptidase [Pseudomonas syringae pv. syringae B728a], gi...	281.0	[0..4]	[258..3]
gi\|68342856, gi\|... - gi\|70728557\|ref\|YP_258306.1\| methionine aminopeptidase [Pseudomonas fluorescens Pf-5], gi\|68342856\|g...	281.0	[0..5]	[258..40]
gi\|71846991, gi\|... - gi\|71907370\|ref\|YP_284957.1\| methionine aminopeptidase [Dechloromonas aromatica RCB], gi\|71846991\|gb...	281.0	[0..4]	[259..3]
gi\|58426200 - gi\|58426200\|gb\|AAW75237.1\| methionine aminopeptidase [Xanthomonas oryzae pv. oryzae KACC10331]	279.0	[0..6]	[259..108]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGIIIKTPE EIEKMRELGK LVAEALDYIG QFVKPGVTTD EIDKLVYDYH VNVQGGYPAP  60
   61 LHYGNPPYPK SCCTSVNHVI CHGIPDDKPL KEGDIINIDL TIKKDGFHGD SSRMFTVGKV 120
  121 SPIAQRLIDV THASMMAGIE AVKPGATLGD VGYACQQVAE NAGYSVVQEF CGHGIGRGFH 180
  181 EAPQVLHYGK KGQGPVLKPG MIFTVEPMIN QGKRHLRILN DGWTVVTKDR SLSAQWEHEV 240
  241 LVTETGYEIL TVSPASGKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.69897
Match:	4matA
Description:	Methionine aminopeptidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidase activity	0.71486512278733	bayes_pls_golite062009
catalytic activity	0.51899181055614	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.41611107366763	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: