YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220959062, gi...
Organism:	synthetic construct
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220959062, gi....

Description	E-value	Query Range	Subject Range
gi\|125775312, gi... - gi\|54638646\|gb\|EAL28048.1\| GA10227-PA [Drosophila pseudoobscura], gi\|125775312\|ref\|XP_001358905.1\| G...	255.0	[0..2]	[187..1]
gi\|108870917, gi... - gi\|157133196\|ref\|XP_001662795.1\| phosphatidylethanolamine-binding protein [Aedes aegypti], gi\|108870...	250.0	[0..2]	[183..28]
gi\|110763671 - gi\|110763671\|ref\|XP_623194.2\| PREDICTED: similar to CG6180-PA isoform 2 [Apis mellifera]	242.0	[0..1]	[185..25]
gi\|95102826, gi\|... - gi\|95102826\|gb\|ABF51354.1\| phosphatidylethanolamine binding protein isoform 2 [Bombyx mori], gi\|1537...	240.0	[0..1]	[183..11]
gi\|220954556, gi... - gi\|220954556\|gb\|ACL89821.1\| CG6180-PA [synthetic construct], gi\|220944770\|gb\|ACL84928.1\| CG6180-PA [... CG6180-PA - This gene is referred to in FlyBase by the symbol Dmel\CG6180 (CG6180, FBgn0032453). It is a protein...	235.0	[0..8]	[183..80]
gi\|21730513 - gi\|21730513\|pdb\|1KN3\|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding Protein-2)	230.0	[0..1]	[186..1]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSTVCFSK HKIVPDILKT CPATLLTVTY GGGQVVDVGG ELTPTQVQSQ PKVKWDADPN  60
   61 AFYTLLLTDP DAPSRKEPKF REWHHWLVVN IPGNQVENGV VLTEYVGAGP PQGTGLHRYV 120
  121 FLVFKQPQKL TCNEPKIPKT SGDKRANFST SKFMSKYKLG DPIAGNFFQA QWDDYVPKLY 180
  181 KQLSGKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.0
Match:	1kn3A
Description:	Phosphatidylethanolamine binding protein, PEBP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphatidylethanolamine binding	2.39921319648948	bayes_pls_golite062009
binding	2.32908422264841	bayes_pls_golite062009
phospholipid binding	1.70781158126196	bayes_pls_golite062009
lipid binding	1.58605438198908	bayes_pls_golite062009
protein binding	1.4054795148286	bayes_pls_golite062009
receptor binding	1.09518634969861	bayes_pls_golite062009
structural constituent of ribosome	0.929941934821651	bayes_pls_golite062009
structural molecule activity	0.895834390293113	bayes_pls_golite062009
enzyme inhibitor activity	0.10294346442997	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: