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View Structure Prediction Details

Protein: gi|220954436, gi...
Organism: synthetic construct
Length: 180 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220954436, gi....

Description E-value Query
Range		 Subject
Range
gi|76640106 - gi|76640106|ref|XP_587055.2| PREDICTED: similar to 60S ribosome subunit biogenesis protein NIP7 homo...
 346.0 [0..1] [179..1]
NIP7_PIG - 60S ribosome subunit biogenesis protein NIP7 homolog OS=Sus scrofa GN=NIP7 PE=2 SV=1
 346.0 [0..1] [179..1]
NIP7 - nuclear import 7 homolog (S. cerevisiae)
NIP7_PONPY - 60S ribosome subunit biogenesis protein NIP7 homolog - Pongo pygmaeus (Orangutan)
NIP7_PONAB - 60S ribosome subunit biogenesis protein NIP7 homolog OS=Pongo abelii GN=NIP7 PE=2 SV=1
gi|123995231, gi... - gi|123995231|gb|ABM85217.1| nuclear import 7 homolog (S. cerevisiae) [synthetic construct], gi|12398...
ENSPTRT00000044085 - null
gi|90082984 - gi|90082984|dbj|BAE90574.1| unnamed protein product [Macaca fascicularis]
 345.0 [0..1] [179..1]
NIP7_RAT - 60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus GN=Nip7 PE=2 SV=1
 343.0 [0..1] [179..1]
NIP7_MOUSE - 60S ribosome subunit biogenesis protein NIP7 homolog OS=Mus musculus GN=Nip7 PE=1 SV=1
 343.0 [0..1] [179..1]
gi|57087185 - gi|57087185|ref|XP_536804.1| PREDICTED: similar to 60S ribosome subunit biogenesis protein NIP7 homo...
 343.0 [0..1] [179..1]
NIP7_XENLA - 60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis GN=nip7 PE=2 SV=1
 343.0 [0..1] [179..1]
NIP7_SCHPO - 60S ribosome subunit biogenesis protein nip7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...
SPCC320.11c - RNA-binding protein
 339.0 [0..1] [180..1]

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Predicted Domain #1
Region A:
Residues: [1-180] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLSDERAK ILFEHLSKYI GTNVKHLIDR PDGTYCFREH KDRVYYVSER ILKLSECFGY  60
   61 KQLVCVGTCF GKFSKTNKLK FHITALYYLA PYAQYKVWVK PSFEQQFLYG NHIPKTGLGR 120
  121 ITENAGQYQG VVVYSMNDLP LGFGVLARST TDCKTADPMT TVCFHQSDIG EYIRAEDTLF 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 95.522879
Match: 1t5yA
Description: Crystal Structure of Northeast Structural Genomics Consortium Target HR2118: A Human Homolog of Saccharomyces cerevisiae Nip7p
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
RNA binding 2.67504868533195 bayes_pls_golite062009
binding 1.85616760502339 bayes_pls_golite062009
nucleic acid binding 1.26170105245043 bayes_pls_golite062009
transcription regulator activity 1.25899985044692 bayes_pls_golite062009
DNA binding 1.00086161863786 bayes_pls_golite062009
transcription factor activity 0.459074630080185 bayes_pls_golite062009
protein binding 0.377070376016177 bayes_pls_golite062009
ligase activity 0.365702917579223 bayes_pls_golite062009
catalytic activity 0.147263815852997 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle