YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218198880
Organism:	Oryza sativa Indica Group
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218198880.

Description	E-value	Query Range	Subject Range
gi\|21553960 - gi\|21553960\|gb\|AAM63041.1\| unknown [Arabidopsis thaliana]	164.0	[0..3]	[113..5]
gi\|14585847 - gi\|14585847\|gb\|AAK67625.1\| hypothetical protein CX157 [Homo sapiens]	163.0	[0..1]	[113..1]
gi\|157167424, gi... - gi\|157167424\|ref\|XP_001660686.1\| NADH:ubiquinone dehydrogenase, putative [Aedes aegypti], gi\|1088735...	140.0	[0..5]	[103..2]
gi\|55236086, gi\|... - gi\|58391934\|ref\|XP_318983.2\| ENSANGP00000014833 [Anopheles gambiae str. PEST], gi\|55236086\|gb\|EAA144...	136.0	[0..5]	[103..2]
gi\|109087441 - gi\|109087441\|ref\|XP_001100168.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcom...	135.0	[0..11]	[95..9]
gi\|187469746, gi... - gi\|197245756\|gb\|AAI68767.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 [Rattus norvegicus]...	134.0	[0..1]	[95..1]
NDUB9_MOUSE - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=Ndufb9 PE=1 SV=3	132.0	[0..1]	[95..1]

Back

Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSAGFLAR RAAQKERVRL LYRRALKDTL NWAVHRHLFY QDASDLREKF EANRDVDNPD  60
   61 VIDRLIDDAE AQYRNFQHPD PYIVPWAPGG SKFTRNPPPP KGIEIIYNYG KED

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.366532
Match:	PF05347.6
Description:	No description for PF05347.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits