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View Structure Prediction Details

Protein: gi|218198880
Organism: Oryza sativa Indica Group
Length: 113 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218198880.

Description E-value Query
Range
Subject
Range
gi|21553960 - gi|21553960|gb|AAM63041.1| unknown [Arabidopsis thaliana]
164.0 [0..3] [113..5]
gi|14585847 - gi|14585847|gb|AAK67625.1| hypothetical protein CX157 [Homo sapiens]
163.0 [0..1] [113..1]
gi|157167424, gi... - gi|157167424|ref|XP_001660686.1| NADH:ubiquinone dehydrogenase, putative [Aedes aegypti], gi|1088735...
140.0 [0..5] [103..2]
gi|55236086, gi|... - gi|58391934|ref|XP_318983.2| ENSANGP00000014833 [Anopheles gambiae str. PEST], gi|55236086|gb|EAA144...
136.0 [0..5] [103..2]
gi|109087441 - gi|109087441|ref|XP_001100168.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcom...
135.0 [0..11] [95..9]
gi|187469746, gi... - gi|197245756|gb|AAI68767.1| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 [Rattus norvegicus]...
134.0 [0..1] [95..1]
NDUB9_MOUSE - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=Ndufb9 PE=1 SV=3
132.0 [0..1] [95..1]

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Predicted Domain #1
Region A:
Residues: [1-113]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSAGFLAR RAAQKERVRL LYRRALKDTL NWAVHRHLFY QDASDLREKF EANRDVDNPD  60
   61 VIDRLIDDAE AQYRNFQHPD PYIVPWAPGG SKFTRNPPPP KGIEIIYNYG KED

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 22.366532
Match: PF05347.6
Description: No description for PF05347.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.790 N/A N/A a.29.5 alpha-ketoacid dehydrogenase kinase, N-terminal domain
View Download 0.735 N/A N/A a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.735 N/A N/A a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.711 N/A N/A a.246.1 Description not found.
View Download 0.710 N/A N/A a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.708 N/A N/A a.8.6 Description not found.
View Download 0.674 N/A N/A a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View Download 0.649 N/A N/A c.95.1 Thiolase-like
View Download 0.513 N/A N/A a.7.8 GAT domain
View Download 0.386 N/A N/A a.7.8 GAT domain
View Download 0.357 N/A N/A a.7.8 GAT domain
View Download 0.320 N/A N/A a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.315 N/A N/A a.7.8 GAT domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle