YRC Public Data Repository - Protein Structure Prediction

Protein:	YAB4_ARATH
Organism:	Arabidopsis thaliana
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAB4_ARATH.

Description	E-value	Query Range	Subject Range
gi\|8778574, gi\|9... - gi\|9295696\|gb\|AAF87002.1\|AC005292_11 F26F24.29 [Arabidopsis thaliana], gi\|8778574\|gb\|AAF79582.1\|AC00...	323.0	[0..1]	[231..32]
gi\|27804377 - gi\|27804377\|gb\|AAO22990.1\| YABBY transcription factor CDM51 [Chrysanthemum x morifolium]	290.0	[0..12]	[214..14]
gi\|41745624 - gi\|41745624\|gb\|AAS10177.1\| YABBY-like transcription factor GRAMINIFOLIA [Antirrhinum majus]	287.0	[0..10]	[214..9]
gi\|34013378 - gi\|34013378\|dbj\|BAC82106.1\| putative transcription factor [Nymphaea alba]	287.0	[0..11]	[229..1]
gi\|34013380 - gi\|34013380\|dbj\|BAC82107.1\| putative transcription factor [Nymphaea colorata]	272.0	[0..11]	[229..1]
gi\|32330677 - gi\|32330677\|gb\|AAP79885.1\| yabby15 protein [Zea mays]	265.0	[0..9]	[208..5]
YAB5_ORYSJ - Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1 YAB5_ORYSI - Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=3 SV=2	265.0	[0..1]	[208..2]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKLPNMTTT LNHLFDLPGQ ICHVQCGFCT TILLVSVPFT SLSMVVTVRC GHCTSLLSVN  60
   61 LMKASFIPLH LLASLSH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.958607
Match:	PF04690.4
Description:	No description for PF04690.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [78-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDETGKEEVA ATDGVEEEAW KVNQEKENSP TTLVSSSDNE DEDVSRVYQV VNKPPEKRQR  60
   61 APSAYNCFIK EEIRRLKAQN PSMAHKEAFS LAAKNWAHFP PAHNKRAASD QCFCEEDNNA 120
  121 ILPCNVFEDH EESNNGFRER KAQRHSIWGK SPFE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.28
Match:	2gzkA
Description:	No description for 2gzkA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits