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Protein Overview: YAB5_ORYSI

General Information:
Name(s) found: YAB5_ORYSI [Swiss-Prot]
Description(s) found:
Found 2 descriptions.
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  • Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=3 SV=2 [Swiss-Prot]
    • Organism: Oryza sativa Indica Group
    Length: 266 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSSAPETFS LDHLSQHQQQ QPPPLAEQEQ LCYVHCNFCD TILAVGVPCS SLFKTVTVRC  60
   61 GHCANLLSVN LRGLLLPAAA STANQLPFGQ ALLSPTSPHG LLDEVPSFQA PASLMTEQAS 120
  121 PNVSSITSSN SSCANNAPAT SMASAANKAT QREPQQPKNA PSANRTSEKR QRVPSAYNRF 180
  181 IKDEIQRIKA SNPDITHREA FSAAAKNWAH FPHIHFGLMP DQGLKKTGIQ SQDGAGECML 240
  241 FKDGLYAAAA AAAAATAASS MGVTPF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..109] MSA 1.037977 View MSA. No confident structure predictions are available.
    2 View Details [110..266] FFAS03 1.15 No description for 2gzkA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.766544438556065 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.108869360134825 bayes_pls_golite062009
  • DNA binding
    		•  0.0647553670136354 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.62

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle