YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|213052119
Organism: Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length: 429 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213052119.

Description E-value Query
Range
Subject
Range
gi|54309497, gi|... - gi|54309497|ref|YP_130517.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Photobacterium...
0.0 [2..422] [6..426]
gi|6137239 - gi|6137239|gb|AAF04396.1|AF191556_4 BioA [Xenorhabdus nematophila]
0.0 [1..422] [1..422]
gi|90324428, gi|... - gi|90414520|ref|ZP_01222495.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Photobacteri...
0.0 [2..422] [6..426]
gi|90439149, gi|... - gi|90579575|ref|ZP_01235384.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Vibrio angus...
0.0 [6..424] [9..427]
gi|85835175, gi|... - gi|86147110|ref|ZP_01065427.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Vibrio sp. M...
0.0 [6..427] [3..424]
gi|89050272, gi|... - gi|89073944|ref|ZP_01160450.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Photobacteri...
0.0 [1..424] [4..427]
gi|84394180, gi|... - gi|84394180|ref|ZP_00992911.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Vibrio splen...
0.0 [6..423] [3..420]
gi|238799266, gi... - gi|77960830|ref|ZP_00824685.1| COG0161: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [...
0.0 [1..422] [1..422]
gi|238713891, gi... - gi|77957363|ref|ZP_00821421.1| COG0161: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [...
0.0 [1..422] [1..422]
gi|238726562, gi... - gi|77976759|ref|ZP_00832231.1| COG0161: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [...
0.0 [1..421] [1..421]

Back

Predicted Domain #1
Region A:
Residues: [1-429]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTDDLAFDK RHIWHPYTSM TSPLPVYPVE RAEGCELVLA SGERLIEGMS SWWAAIHGYN  60
   61 HPQLNAAMKA QIDAMSHVMF GGITHQPAVN LCRKLVAITP EPLECVFLAD SGSVSVEVAM 120
  121 KMALQYWQAR GESRQRFLTF RHGYHGDTFG AMSVCDPDNS MHSLWKGYLP ENLFAPAPQS 180
  181 RMDGEWDESD IAPFARLMAA HRHEIAAVIL EPIVQGAGGM RIYHPQWLRR IRNMCDREGI 240
  241 LLIADEIATG FGRTGKLFAC EHAGIAPDIL CLGKALTGGT MTLSATLTTR QVAETISNGE 300
  301 AGCFMHGPTF MGNPLACAVA CASLTLLESG EWRQQVASIE SQLRAELAPA QSSPWVADVR 360
  361 VLGAIGVVET THPVNMAALQ RFFVGQGVWI RPFGKLIYLM PPYIIRPDQL RRLTQAVNDA 420
  421 VHNETFFSH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 104.0
Match: 1s08A
Description: Crystal Structure of the D147N Mutant of 7,8-Diaminopelargonic Acid Synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
4-aminobutyrate transaminase activity 3.63797881096751 bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity 3.359406422625 bayes_pls_golite062009
catalytic activity 2.29878871754893 bayes_pls_golite062009
5-aminolevulinate synthase activity 1.85905571238884 bayes_pls_golite062009
adenosylmethionine-8-amino-7-oxononanoate transaminase activity 1.74778109525713 bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity 1.63055151623667 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 1.63055151623667 bayes_pls_golite062009
transferase activity 1.44093490824786 bayes_pls_golite062009
N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity 1.4383564662931 bayes_pls_golite062009
transferase activity, transferring nitrogenous groups 1.28316822767388 bayes_pls_golite062009
transaminase activity 1.24990480711889 bayes_pls_golite062009
transferase activity, transferring acyl groups 1.19150094103499 bayes_pls_golite062009
succinate-semialdehyde dehydrogenase binding 0.78144409237642 bayes_pls_golite062009
carbon-sulfur lyase activity 0.698312655247044 bayes_pls_golite062009
intramolecular transferase activity, transferring amino groups 0.659071155545801 bayes_pls_golite062009
N-succinyltransferase activity 0.52897097514616 bayes_pls_golite062009
binding 0.49769115245722 bayes_pls_golite062009
ornithine-oxo-acid transaminase activity 0.311107335626334 bayes_pls_golite062009
N-acyltransferase activity 0.2609065149092 bayes_pls_golite062009
kynureninase activity 0.242752584041108 bayes_pls_golite062009
nucleic acid binding 0.186646089509162 bayes_pls_golite062009
vitamin B6 binding 0.16957228630576 bayes_pls_golite062009
pyridoxal phosphate binding 0.16957228630576 bayes_pls_golite062009
cystathionine beta-lyase activity 0.15938456446406 bayes_pls_golite062009
sulfurtransferase activity 0.0450490929307473 bayes_pls_golite062009
DNA binding 0.0281750086102144 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle