YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213646628
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213646628.

Description	E-value	Query Range	Subject Range
gi\|84509178, gi\|... - gi\|84517060\|ref\|ZP_01004417.1\| peptidyl-prolyl cis-trans isomerase, FKBP-type [Loktanella vestfolden...	3.0E-38	[3..146]	[2..144]
gi\|114737865, gi... - gi\|114797691\|ref\|YP_759624.1\| peptidyl-prolyl cis-trans isomerase, FKBP-type [Hyphomonas neptunium A...	1.0E-37	[3..146]	[2..144]
gi\|45914220, gi\|... - gi\|69280282\|ref\|ZP_00614897.1\| Peptidylprolyl isomerase, FKBP-type [Mesorhizobium sp. BNC1], gi\|6818...	4.0E-37	[3..144]	[2..142]
gi\|56680904, gi\|... - gi\|56709219\|ref\|YP_165265.1\| peptidyl-prolyl cis-trans isomerase, FKBP-type [Ruegeria pomeroyi DSS-3...	7.0E-37	[3..143]	[2..141]
gi\|218687902, gi... - gi\|218687902\|ref\|YP_002396114.1\| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Escherich... gi\|218350231, gi... - gi\|218693499\|ref\|YP_002401166.1\| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Escherich... gi\|218698448, gi... - gi\|218698448\|ref\|YP_002406077.1\| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Escherich... gi\|218430385, gi... - gi\|218703288\|ref\|YP_002410807.1\| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Escherich... gi\|187730844, gi... - gi\|75175967\|ref\|ZP_00696146.1\| COG1047: FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Shigella b... gi\|157158699, gi... - gi\|75189132\|ref\|ZP_00702399.1\| COG1047: FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Escherichi... gi\|194439689, gi... - gi\|83584928\|ref\|ZP_00923585.1\| COG1047: FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Escherichi... gi\|208741384, gi... - gi\|208821261\|ref\|ZP_03261581.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Escherichia co... gi\|209160654, gi... - gi\|209399254\|ref\|YP_002268634.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Escherichia c... gi\|89106912, gi\|... - gi\|89106912\|ref\|AP_000692.1\| FKBP-type peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K-... gi\|209917217, gi... - gi\|209917217\|ref\|YP_002291301.1\| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE11], gi\|209... gi\|91070659, gi\|... - gi\|91209085\|ref\|YP_539071.1\| FKBX-type 16kD peptidyl-prolyl cis-trans isomerase (a rotamase) [Escher... gi\|215263261, gi... - gi\|215485189\|ref\|YP_002327620.1\| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Escherich... gi\|217321435, gi... - gi\|217325214\|ref\|ZP_03441298.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Escherichia co... gi\|218547461, gi... - gi\|218547461\|ref\|YP_002381252.1\| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Escherich... gi\|218552612, gi... - gi\|218552612\|ref\|YP_002385525.1\| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Escherich... gi\|218363734, gi... - gi\|218556965\|ref\|YP_002389878.1\| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Escherich... gi\|13359487, gi\|... - gi\|15829285\|ref\|NP_308058.1\| putative FKBX-type 16KD peptidyl-prolyl cis-trans isomerase [Escherichi... gi\|110640239, gi... - gi\|110640239\|ref\|YP_667967.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Escherichia coli... gi\|110613643, gi... - gi\|110804095\|ref\|YP_687615.1\| FKBX-type 16KD peptidyl-prolyl cis-trans isomerase [Shigella flexneri ... gi\|227837907, gi... - gi\|227885078\|ref\|ZP_04002883.1\| FKBX family 16KD peptidyl-prolyl cis-trans isomerase (a rotamase) [E... gi\|226902079, gi... - gi\|237704167\|ref\|ZP_04534648.1\| peptidyl-prolyl cis-trans isomerase [Escherichia sp. 3_2_53FAA], gi\|... gi\|238899433, gi... - gi\|238899433\|ref\|YP_002925229.1\| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Escherich... gi\|242375868, gi... - gi\|251783595\|ref\|YP_002997899.1\| hypothetical protein B21_00031 [Escherichia coli BL21], gi\|24237586... gi\|253325984, gi... - gi\|254286957\|ref\|YP_003052705.1\| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Escherich... gi\|253972055, gi... - gi\|254160154\|ref\|YP_003043262.1\| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Escherich... gi\|254791163, gi... - gi\|254791163\|ref\|YP_003076000.1\| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Escherich... gi\|189376003, gi... - gi\|189376003\|gb\|EDU94419.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Escherichia coli O... gi\|169756541, gi... - gi\|170021613\|ref\|YP_001726567.1\| peptidylprolyl isomerase FKBP-type [Escherichia coli ATCC 8739], gi... gi\|117622317, gi... - gi\|117622317\|ref\|YP_851230.1\| putative FKBX-type 16KD peptidyl-prolyl cis-trans isomerase [Escherich... gi\|170079691, gi... - gi\|170079691\|ref\|YP_001729011.1\| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Escherich... gi\|124531339, gi... - gi\|124531339\|ref\|ZP_01701667.1\| peptidylprolyl isomerase, FKBP-type [Escherichia coli B], gi\|1244986... gi\|170520126, gi... - gi\|170682408\|ref\|YP_001742143.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Escherichia c... gi\|194434547, gi... - gi\|194434547\|ref\|ZP_03066805.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Shigella dysen... gi\|195937701 - gi\|195937701\|ref\|ZP_03083083.1\| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Escherichi... gi\|208808606, gi... - gi\|208808606\|ref\|ZP_03250943.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Escherichia co... gi\|208735054, gi... - gi\|208813777\|ref\|ZP_03255106.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Escherichia co... gi\|188014290, gi... - gi\|188014290\|gb\|EDU52412.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Escherichia coli O... gi\|189356075, gi... - gi\|189356075\|gb\|EDU74494.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Escherichia coli O... gi\|168762788, gi... - gi\|189366950\|gb\|EDU85366.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Escherichia coli O... gi\|168766716, gi... - gi\|189364247\|gb\|EDU82666.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Escherichia coli O... gi\|187767708, gi... - gi\|187767708\|gb\|EDU31552.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Escherichia coli O... gi\|189000722, gi... - gi\|189000722\|gb\|EDU69708.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Escherichia coli O... gi\|168785079, gi... - gi\|189374789\|gb\|EDU93205.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Escherichia coli O... FKBX_SHIFL - FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase OS=Shigella flexneri GN=fkpB PE=3 SV=2 FKBX_ECOLI - FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) - Escherichia ... gi\|24111474, gi\|... - gi\|24111474\|ref\|NP_705984.1\| FKBX-type 16kD peptidyl-prolyl cis-trans isomerase (a rotamase) [Shigel... FKBX_ECOL6 - FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC... gi\|30061596, gi\|... - gi\|30061596\|ref\|NP_835767.1\| FKBX-type 16kD peptidyl-prolyl cis-trans isomerase (a rotamase) [Shigel... FKBX_ECO57 - FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase OS=Escherichia coli O157:H7 GN=fkpB PE=3 SV=2 EG11080 - FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) / FKBP-type peptidyl-prolyl cis-trans isome... gi\|15799710, gi\|... - gi\|15799710\|ref\|NP_285722.1\| FKBX-type 16KD peptidyl-prolyl cis-trans isomerase (a rotamase) [Escher... FKBX_ECOL6 - FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase OS=Escherichia coli O6 GN=fkpB PE=3 SV=2 gi\|82542644, gi\|... - gi\|82542644\|ref\|YP_406591.1\| FKBX-type 16KD peptidyl-prolyl cis-trans isomerase [Shigella boydii Sb2... gi\|191168901, gi... - gi\|75227858\|ref\|ZP_00714568.1\| COG1047: FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Escherichi... gi\|192955709, gi... - gi\|75234161\|ref\|ZP_00718565.1\| COG1047: FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Escherichi... EG11080 - FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) / FKBP-type peptidyl-prolyl cis-trans isome... gi\|157065175, gi... - gi\|75194249\|ref\|ZP_00704319.1\| COG1047: FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Escherichi... gi\|194429867, gi... - gi\|75208884\|ref\|ZP_00709161.1\| COG1047: FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Escherichi... gi\|75515616, gi\|... - gi\|75515616\|ref\|ZP_00737773.1\| COG1047: FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Escherichi... gi\|74310646, gi\|... - gi\|74310646\|ref\|YP_309065.1\| FKBX-type 16KD peptidyl-prolyl cis-trans isomerase [Shigella sonnei Ss0... gi\|190905622, gi... - gi\|75237179\|ref\|ZP_00721227.1\| COG1047: FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Escherichi... gi\|193066205, gi... - gi\|75255683\|ref\|ZP_00727449.1\| COG1047: FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Escherichi...	8.0E-37	[1..149]	[1..149]
gi\|148655750, gi... - gi\|148655750\|ref\|YP_001275955.1\| peptidylprolyl isomerase, FKBP-type [Roseiflexus sp. RS-1], gi\|1485...	9.0E-37	[4..144]	[3..142]
gi\|86136005, gi\|... - gi\|86136005\|ref\|ZP_01054584.1\| peptidyl-prolyl cis-trans isomerase, FKBP-type [Roseobacter sp. MED19...	1.0E-36	[1..143]	[1..141]
gi\|85706311, gi\|... - gi\|85706311\|ref\|ZP_01037405.1\| peptidyl-prolyl cis-trans isomerase, FKBP-type [Roseovarius sp. 217],...	3.0E-36	[3..143]	[2..141]
gi\|81239578, gi\|... - gi\|82775430\|ref\|YP_401777.1\| FKBX-type 16KD peptidyl-prolyl cis-trans isomerase [Shigella dysenteria...	6.0E-36	[1..149]	[1..149]
gi\|110681064, gi... - gi\|110681064\|ref\|YP_684071.1\| peptidyl-prolyl cis-trans isomerase, FKBP-type, putative [Roseobacter ...	8.0E-36	[5..146]	[4..144]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSVQSNSA ILVHFTLKLD DGSTAESTRN NGKPALFRLG DTSLSEGLEQ QLLGLKEGEK  60
   61 KAFSLEPDAA FGVPSPDLIQ YFSRREFMAA GEPEVGAIML FTAMDGSEMP GVIREINGDS 120
  121 ITVDFNHPLA GHTVHFDIEV LEIDPALEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	1ix5A
Description:	Archaeal FKBP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidyl-prolyl cis-trans isomerase activity	4.4182664267098	bayes_pls_golite062009
cis-trans isomerase activity	4.33661522951196	bayes_pls_golite062009
isomerase activity	2.83057106437196	bayes_pls_golite062009
macrolide binding	1.34183721806994	bayes_pls_golite062009
catalytic activity	1.25572252987503	bayes_pls_golite062009
FK506 binding	1.11705415888427	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: