YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213417285
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E01-6750
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213417285.

Description	E-value	Query Range	Subject Range
gi\|188495893, gi... - gi\|75512031\|ref\|ZP_00734626.1\| COG1961: Site-specific recombinases, DNA invertase Pin homologs [Esch...	8.0E-53	[1..190]	[1..190]
gi\|82543327, gi\|... - gi\|82543327\|ref\|YP_407274.1\| inversion of adjacent DNA; at locus of e14 element [Shigella boydii Sb2...	3.0E-52	[1..183]	[1..183]
gi\|75259863 - gi\|75259863\|ref\|ZP_00731141.1\| COG1961: Site-specific recombinases, DNA invertase Pin homologs [Esch...	5.0E-52	[1..190]	[1..190]
gi\|96088, gi\|42225 - pir\|\|S18680 DNA-invertase - Escherichia coli plasmid p15B, gi\|42225\|emb\|CAA44043.1\| Min [Escherichia...	7.0E-52	[1..190]	[1..190]
gi\|209483441 - gi\|209483441\|gb\|ACI47260.1\| InvA [Klebsiella pneumoniae] gi\|156936517, gi... - gi\|156936517\|ref\|YP_001440432.1\| hypothetical protein ESA_pESA2p06563 [Enterobacter sakazakii ATCC B... gi\|34013343, gi\|... - gi\|34500522\|ref\|NP_904293.1\| DNA invertase [Delftia acidovorans], gi\|34013343\|dbj\|BAC82016.1\| DNA in... gi\|46319637, gi\|... - gi\|67543486\|ref\|ZP_00421418.1\| Resolvase, N-terminal:Resolvase helix-turn-helix region [Burkholderia... gi\|51470645, gi\|... - gi\|51492602\|ref\|YP_067899.1\| DNA recombinase [Aeromonas punctata], gi\|51470645\|emb\|CAG15136.1\| DNA r... gi\|217507883, gi... - gi\|217970556\|ref\|YP_002355790.1\| Resolvase domain protein [Thauera sp. MZ1T], gi\|217507883\|gb\|ACK548...	8.0E-52	[1..182]	[1..182]
gi\|16762269 - gi\|16762269\|ref\|NP_457886.1\| DNA-invertase [Salmonella enterica subsp. enterica serovar Typhi str. C... gi\|16504573, gi\|... - gi\|25300483\|pir\|\|AF0929 DNA-invertase [imported] - Salmonella enterica subsp. enterica serovar Typhi... gi\|213650678 - gi\|213650678\|ref\|ZP_03380731.1\| putative DNA-invertase [Salmonella enterica subsp. enterica serovar ...	9.0E-52	[1..183]	[1..183]
gi\|213051606 - gi\|213051606\|ref\|ZP_03344484.1\| DNA-invertase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213428326 - gi\|213428326\|ref\|ZP_03361076.1\| DNA-invertase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213027054 - gi\|213027054\|ref\|ZP_03341501.1\| DNA-invertase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|29143757, gi\|... - gi\|29143757\|ref\|NP_807099.1\| DNA-invertase [Salmonella enterica subsp. enterica serovar Typhi str. T... gi\|213999943 - gi\|213999943\|ref\|ZP_03410678.1\| DNA-invertase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213865100 - gi\|213865100\|ref\|ZP_03387219.1\| DNA-invertase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213975187 - gi\|213975187\|ref\|ZP_03402446.1\| DNA-invertase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213579962 - gi\|213579962\|ref\|ZP_03361788.1\| DNA-invertase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213621957 - gi\|213621957\|ref\|ZP_03374740.1\| DNA-invertase [Salmonella enterica subsp. enterica serovar Typhi str...	1.0E-51	[1..183]	[1..183]
gi\|11277975 - pir\|\|C82863 recombinase XFa0019 [imported] - Xylella fastidiosa (strain 9a5c) gi\|10956730, gi\|... - gi\|9112257\|gb\|AAF85588.1\|AE003851_19 recombinase [Xylella fastidiosa 9a5c], gi\|10956730\|ref\|NP_06167...	3.0E-51	[1..182]	[4..185]
gi\|110829362, gi... - gi\|121608377\|ref\|YP_996184.1\| resolvase domain-containing protein [Verminephrobacter eiseniae EF01-2...	3.0E-51	[1..182]	[1..182]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIGYIRVST NDQNTDLQRN ALNCAGCELI FEDKISGTKS ARPGLKKLLR TLSEGDTLVV  60
   61 WKLDRLGRSM KHLITLIEEL REKGVNFRSL TDSIDTSTPM GRFFFHVMGA LAEMERELIV 120
  121 ERTLAGLEAA RAQGRIGGRR PKLTKEQHEQ IARLIKNGYS RKQLAIIYDI GISTIYRYHP 180
  181 VEELQTQAEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	2gm4A
Description:	No description for 2gm4A was found.

Predicted functions:

Term	Confidence	Notes
site-specific recombinase activity	3.0240363733074	bayes_pls_golite062009
transcription regulator activity	1.76956337706487	bayes_pls_golite062009
DNA binding	1.58100039759954	bayes_pls_golite062009
nucleic acid binding	1.46839493313894	bayes_pls_golite062009
catalytic activity	1.20658247466773	bayes_pls_golite062009
transcription factor activity	1.0707787742149	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: