YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|204320767, gi...
Organism:	Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|204320767, gi....

Description	E-value	Query Range	Subject Range
gi\|77973731 - gi\|77973731\|ref\|ZP_00829276.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Yersinia fred...	4.0E-53	[1..209]	[1..209]
gi\|77960720 - gi\|77960720\|ref\|ZP_00824579.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Yersinia moll...	5.0E-53	[1..209]	[1..209]
gi\|77978105 - gi\|77978105\|ref\|ZP_00833539.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Yersinia inte...	6.0E-53	[1..209]	[1..209]
gi\|12720656, gi\|... - gi\|15602271\|ref\|NP_245343.1\| FdxI [Pasteurella multocida subsp. multocida str. Pm70], gi\|12720656\|gb...	5.0E-52	[1..211]	[6..218]
gi\|187430015, gi... - gi\|75176721\|ref\|ZP_00696849.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Shigella boyd...	1.0E-51	[1..211]	[1..211]
gi\|218363224, gi... - gi\|218556455\|ref\|YP_002389369.1\| formate dehydrogenase-O subunit gamma [Escherichia coli IAI1], gi\|2... gi\|218367734, gi... - gi\|218560965\|ref\|YP_002393878.1\| formate dehydrogenase-O subunit gamma [Escherichia coli S88], gi\|21... gi\|218697607, gi... - gi\|218697607\|ref\|YP_002405274.1\| formate dehydrogenase-O subunit gamma [Escherichia coli 55989], gi\|... gi\|218701407, gi... - gi\|218701407\|ref\|YP_002409036.1\| formate dehydrogenase-O subunit gamma [Escherichia coli IAI39], gi\|... gi\|115515286, gi... - gi\|117626162\|ref\|YP_859485.1\| formate dehydrogenase-O subunit gamma [Escherichia coli APEC O1], gi\|1... gi\|218707521, gi... - gi\|218707521\|ref\|YP_002415040.1\| formate dehydrogenase-O subunit gamma [Escherichia coli UMN026], gi... gi\|124501255, gi... - gi\|124527553\|ref\|ZP_01699018.1\| formate dehydrogenase, gamma subunit [Escherichia coli B], gi\|124501... gi\|208726288, gi... - gi\|208806487\|ref\|ZP_03248824.1\| formate dehydrogenase-O, gamma subunit [Escherichia coli O157:H7 str... gi\|208811928, gi... - gi\|208811928\|ref\|ZP_03253257.1\| formate dehydrogenase-O, gamma subunit [Escherichia coli O157:H7 str... gi\|208742011, gi... - gi\|208821888\|ref\|ZP_03262208.1\| formate dehydrogenase-O, gamma subunit [Escherichia coli O157:H7 str... gi\|209399092, gi... - gi\|209399092\|ref\|YP_002273409.1\| formate dehydrogenase-O, gamma subunit [Escherichia coli O157:H7 st... gi\|209921369, gi... - gi\|209921369\|ref\|YP_002295453.1\| formate dehydrogenase-O subunit gamma [Escherichia coli SE11], gi\|2... gi\|215267294, gi... - gi\|215489222\|ref\|YP_002331653.1\| formate dehydrogenase-O subunit gamma [Escherichia coli O127:H6 str... gi\|217320706, gi... - gi\|217324485\|ref\|ZP_03440569.1\| formate dehydrogenase-O, gamma subunit [Escherichia coli O157:H7 str... gi\|218551126, gi... - gi\|218551126\|ref\|YP_002384917.1\| formate dehydrogenase-O subunit gamma [Escherichia fergusonii ATCC ... gi\|254595287, gi... - gi\|254795887\|ref\|YP_003080724.1\| formate dehydrogenase-O, cytochrome b556 subunit [Escherichia coli ... gi\|253975743, gi... - gi\|254163842\|ref\|YP_003046950.1\| formate dehydrogenase-O, cytochrome b556 subunit [Escherichia coli ... gi\|226838539, gi... - gi\|254039103\|ref\|ZP_04873153.1\| formate dehydrogenase-O subunit gamma [Escherichia sp. 1_1_43], gi\|2... gi\|253775470, gi... - gi\|254290593\|ref\|YP_003056341.1\| formate dehydrogenase-O, cytochrome b556 subunit [Escherichia coli ... gi\|251787156, gi... - gi\|251787156\|ref\|YP_003001460.1\| hypothetical protein B21_03726 [Escherichia coli BL21], gi\|24237942... gi\|238861133, gi... - gi\|238902959\|ref\|YP_002928755.1\| formate dehydrogenase-O, cytochrome b556 subunit [Escherichia coli ... gi\|226902861, gi... - gi\|237702924\|ref\|ZP_04533405.1\| formate dehydrogenase-O subunit gamma [Escherichia sp. 3_2_53FAA], g... EG11856 - formate dehydrogenase-O, cytochrome b556 subunit / Formate dehydrogenase-O cytochrome b556 subunit, ... gi\|227885368, gi... - gi\|227885368\|ref\|ZP_04003173.1\| formate dehydrogenase-O subunit gamma [Escherichia coli 83972], gi\|2... FDOI_ECOL6 - Formate dehydrogenase, cytochrome b556(fdo) subunit OS=Escherichia coli O6:H1 (strain CFT073 / ATCC ... FDOI_ECO57 - Formate dehydrogenase, cytochrome b556(fdo) subunit OS=Escherichia coli O157:H7 GN=fdoI PE=3 SV=1 EG11856 - formate dehydrogenase-O, cytochrome b556 subunit / Formate dehydrogenase-O cytochrome b556 subunit, ... gi\|168768187, gi... - gi\|189362744\|gb\|EDU81163.1\| formate dehydrogenase-O, gamma subunit [Escherichia coli O157:H7 str. EC... gi\|168775281, gi... - gi\|187769119\|gb\|EDU32963.1\| formate dehydrogenase-O, gamma subunit [Escherichia coli O157:H7 str. EC... gi\|168780803, gi... - gi\|189001407\|gb\|EDU70393.1\| formate dehydrogenase-O, gamma subunit [Escherichia coli O157:H7 str. EC... gi\|168786741, gi... - gi\|189373452\|gb\|EDU91868.1\| formate dehydrogenase-O, gamma subunit [Escherichia coli O157:H7 str. EC... gi\|91075010, gi\|... - gi\|91213436\|ref\|YP_543422.1\| formate dehydrogenase-O subunit gamma [Escherichia coli UTI89], gi\|9107... gi\|189378091, gi... - gi\|189378091\|gb\|EDU96507.1\| formate dehydrogenase-O, gamma subunit [Escherichia coli O157:H7 str. EC... gi\|13364294, gi\|... - gi\|15834072\|ref\|NP_312845.1\| formate dehydrogenase-O subunit gamma [Escherichia coli O157:H7 str. Sa... gi\|170022096, gi... - gi\|170022096\|ref\|YP_001727050.1\| formate dehydrogenase-O subunit gamma [Escherichia coli ATCC 8739],... gi\|170083364, gi... - gi\|170083364\|ref\|YP_001732684.1\| formate dehydrogenase-O, cytochrome b556 subunit [Escherichia coli ... gi\|110644233, gi... - gi\|110644233\|ref\|YP_671963.1\| formate dehydrogenase-O subunit gamma [Escherichia coli 536], gi\|11034... FDOI_ECOL6 - Formate dehydrogenase, cytochrome b556(fdo) subunit OS=Escherichia coli O6 GN=fdoI PE=3 SV=1 gi\|195937532 - gi\|195937532\|ref\|ZP_03082914.1\| formate dehydrogenase-O subunit gamma [Escherichia coli O157:H7 str.... gi\|188016792, gi... - gi\|188016792\|gb\|EDU54914.1\| formate dehydrogenase-O, gamma subunit [Escherichia coli O157:H7 str. EC... gi\|189357114, gi... - gi\|189357114\|gb\|EDU75533.1\| formate dehydrogenase-O, gamma subunit [Escherichia coli O157:H7 str. EC... gi\|189367892, gi... - gi\|189367892\|gb\|EDU86308.1\| formate dehydrogenase-O, gamma subunit [Escherichia coli O157:H7 str. EC... gi\|12518784, gi\|... - gi\|15804481\|ref\|NP_290521.1\| formate dehydrogenase-O subunit gamma [Escherichia coli O157:H7 EDL933]... gi\|89110136, gi\|... - gi\|89110136\|ref\|AP_003916.1\| formate dehydrogenase-O, cytochrome b556 subunit [Escherichia coli str.... gi\|82778935, gi\|... - gi\|82778935\|ref\|YP_405284.1\| formate dehydrogenase-O subunit gamma [Shigella dysenteriae Sd197], gi\|... FDOI_ECOLI - Formate dehydrogenase, cytochrome b556(fdo) subunit (Formate dehydrogenase-O subunit gamma) (FDH-Z s... gi\|81247649, gi\|... - gi\|82546238\|ref\|YP_410185.1\| formate dehydrogenase-O subunit gamma [Shigella boydii Sb227], gi\|81247... gi\|75230413, gi\|... - gi\|75230413\|ref\|ZP_00716899.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Escherichia c... gi\|75237855, gi\|... - gi\|75237855\|ref\|ZP_00721870.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Escherichia c... gi\|75197764, gi\|... - gi\|75197764\|ref\|ZP_00707834.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Escherichia c... gi\|194414467, gi... - gi\|75211294\|ref\|ZP_00711393.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Escherichia c... gi\|188495597, gi... - gi\|75513961\|ref\|ZP_00736314.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Escherichia c... gi\|74314394, gi\|... - gi\|74314394\|ref\|YP_312813.1\| formate dehydrogenase-O subunit gamma [Shigella sonnei Ss046], gi\|73857... gi\|192958639, gi... - gi\|75238335\|ref\|ZP_00722334.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Escherichia c... gi\|192929401, gi... - gi\|75258125\|ref\|ZP_00729586.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Escherichia c... gi\|194438314, gi... - gi\|83586261\|ref\|ZP_00924897.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Escherichia c... gi\|75188627, gi\|... - gi\|75188627\|ref\|ZP_00701894.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Escherichia c... gi\|194433264, gi... - gi\|83569844\|ref\|ZP_00921293.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Shigella dyse...	2.0E-51	[1..211]	[1..211]
gi\|110807418, gi... - gi\|110807418\|ref\|YP_690938.1\| formate dehydrogenase-O subunit gamma [Shigella flexneri 5 str. 8401],... gi\|24054467, gi\|... - gi\|24115186\|ref\|NP_709696.1\| formate dehydrogenase-O subunit gamma [Shigella flexneri 2a str. 301], ... gi\|30043075, gi\|... - gi\|30064815\|ref\|NP_838986.1\| formate dehydrogenase-O subunit gamma [Shigella flexneri 2a str. 2457T]...	3.0E-51	[1..211]	[1..211]
Q663U5\|Q663U5_YERPS - Formate dehydrogenase, cytochrome b556 protein precursor - Yersinia pseudotuberculosis gi\|186897443, gi... - gi\|186897443\|ref\|YP_001874555.1\| formate dehydrogenase-O subunit gamma [Yersinia pseudotuberculosis ... gi\|77630993, gi\|... - gi\|77630993\|ref\|ZP_00793579.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Yersinia pseu... gi\|51598214, gi\|... - gi\|51598214\|ref\|YP_072405.1\| formate dehydrogenase-O subunit gamma [Yersinia pseudotuberculosis IP 3...	2.0E-50	[1..205]	[1..205]
gi\|77959621 - gi\|77959621\|ref\|ZP_00823639.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Yersinia berc...	3.0E-50	[1..209]	[1..209]
gi\|115349651, gi... - gi\|218931040\|ref\|YP_002348915.1\| formate dehydrogenase-O subunit gamma [Yersinia pestis CO92], gi\|16... gi\|45438563, gi\|... - gi\|45443693\|ref\|NP_995232.1\| formate dehydrogenase-O subunit gamma [Yersinia pestis biovar Microtus ... gi\|229696128, gi... - gi\|229839762\|ref\|ZP_04459921.1\| formate dehydrogenase, cytochrome b556 protein [Yersinia pestis biov... gi\|229691185, gi... - gi\|229841846\|ref\|ZP_04462002.1\| formate dehydrogenase, cytochrome b556 protein [Yersinia pestis biov... gi\|229896724, gi... - gi\|229896724\|ref\|ZP_04511888.1\| formate dehydrogenase, cytochrome b556 protein [Yersinia pestis Pest... gi\|77634213, gi\|... - gi\|77634213\|ref\|ZP_00796319.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Yersinia pest... gi\|165936839, gi... - gi\|89105255\|ref\|ZP_01177778.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Yersinia pest... gi\|165922041, gi... - gi\|165926181\|ref\|ZP_02222013.1\| aerobic formate dehydrogenase, cytochrome b556 subunit [Yersinia pes... gi\|108780933, gi... - gi\|108809020\|ref\|YP_652936.1\| formate dehydrogenase-O subunit gamma [Yersinia pestis Antiqua], gi\|10... gi\|229678501, gi... - gi\|229904383\|ref\|ZP_04519494.1\| formate dehydrogenase, cytochrome b556 protein [Yersinia pestis Nepa... gi\|166205498, gi... - gi\|166213200\|ref\|ZP_02239235.1\| aerobic formate dehydrogenase, cytochrome b556 subunit [Yersinia pes... gi\|166009553, gi... - gi\|166009553\|ref\|ZP_02230451.1\| aerobic formate dehydrogenase, cytochrome b556 subunit [Yersinia pes... gi\|167421007, gi... - gi\|167421007\|ref\|ZP_02312760.1\| aerobic formate dehydrogenase, cytochrome b556 subunit [Yersinia pes... gi\|167398646, gi... - gi\|167398646\|ref\|ZP_02304170.1\| aerobic formate dehydrogenase, cytochrome b556 subunit [Yersinia pes... gi\|22127946, gi\|... - gi\|22127946\|ref\|NP_671369.1\| formate dehydrogenase-O subunit gamma [Yersinia pestis KIM], gi\|2196108... gi\|150261001, gi... - gi\|150261001\|ref\|ZP_01917729.1\| formate dehydrogenase, cytochrome b556 protein [Yersinia pestis CA88... gi\|170022302, gi... - gi\|170022302\|ref\|YP_001718807.1\| formate dehydrogenase-O subunit gamma [Yersinia pseudotuberculosis ... gi\|25284129 - pir\|\|AC0493 formate dehydrogenase, cytochrome b556 protein [imported] - Yersinia pestis (strain CO92... gi\|145209057, gi... - gi\|145597361\|ref\|YP_001161436.1\| formate dehydrogenase-O subunit gamma [Yersinia pestis Pestoides F]... gi\|167425482, gi... - gi\|167425482\|ref\|ZP_02317235.1\| aerobic formate dehydrogenase, cytochrome b556 subunit [Yersinia pes...	4.0E-50	[1..205]	[1..205]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRRDTIVRY TAPERINHWI VAFCFVLAAV SGLGFLFPSF NWLMHILGTP QLARILHPFV  60
   61 GVVMFASFII MFFRYWHHNL INRDDIFWAK NIRKIVVNEE VGDTGRYNFG QKCVFWAAII 120
  121 FLVLLLVSGV IIWRPYFAPA FSIPVIRFAL MLHSFAAVAL IVVIMVHIYA ALWVKGTITA 180
  181 MVEGWVTRSW AKKHHPRWYR EVRKTTEKET E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	1kqfC
Description:	Formate dehydrogenase N, cytochrome (gamma) subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
formate dehydrogenase activity	12.0031413212101	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.74953039117709	bayes_pls_golite062009
oxidoreductase activity	6.50321219171766	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	6.34988495153085	bayes_pls_golite062009
ubiquinol-cytochrome-c reductase activity	4.50524595323325	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	4.50524595323325	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	4.29455986972274	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	4.14658254808421	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	4.11558350750273	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	3.50341532760587	bayes_pls_golite062009
electron carrier activity	3.28715047874253	bayes_pls_golite062009
cation transmembrane transporter activity	3.24971217721974	bayes_pls_golite062009
ion transmembrane transporter activity	3.0416933490072	bayes_pls_golite062009
catalytic activity	1.19342057724506	bayes_pls_golite062009
binding	1.00930558921984	bayes_pls_golite062009
protein binding	0.588939203772891	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.173080554590997	bayes_pls_golite062009
substrate-specific transporter activity	0.0890676728517352	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: