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View Structure Prediction Details

Protein: gi|221318406
Organism: Bacillus subtilis subsp. subtilis str. JH642
Length: 366 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221318406.

Description E-value Query
Range
Subject
Range
gi|52079796, gi|... - gi|52785166|ref|YP_090995.1| YkfB [Bacillus licheniformis ATCC 14580], gi|52347668|gb|AAU40302.1| Yk...
327.0 [0..1] [355..1]

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Predicted Domain #1
Region A:
Residues: [1-366]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIRIETSR IAVPLTKPFK TALRTVYTAE SVIVRITYDS GAVGWGEAPP TLVITGDSMD  60
   61 SIESAIHHVL KPALLGKSLA GYEAILHDIQ HLLTGNMSAK AAVEMALYDG WAQMCGLPLY 120
  121 QMLGGYRDTL ETDYTVSVNS PEEMAADAEN YLKQGFQTLK IKVGKDDIAT DIARIQEIRK 180
  181 RVGSAVKLRL DANQGWRPKE AVTAIRKMED AGLGIELVEQ PVHKDDLAGL KKVTDATDTP 240
  241 IMADESVFTP RQAFEVLQTR SADLINIKLM KAGGISGAEK INAMAEACGV ECMVGSMIET 300
  301 KLGITAAAHF AASKRNITRF DFDAPLMLKT DVFNGGITYS GSTISMPGKP GLGIIGAALL 360
  361 KGEKEQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 88.39794
Match: 1jpmA
Description: L-Ala-D/L-Glu epimerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
phosphopyruvate hydratase activity 3.65145751665944 bayes_pls_golite062009
catalytic activity 2.92832446329541 bayes_pls_golite062009
lyase activity 1.61745438895474 bayes_pls_golite062009
carbon-oxygen lyase activity 1.51302044976924 bayes_pls_golite062009
hydro-lyase activity 1.43371609516163 bayes_pls_golite062009
isomerase activity 0.8538677780966 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle