YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|161486802
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|161486802.

Description	E-value	Query Range	Subject Range
gi\|117623750, gi... - gi\|117623750\|ref\|YP_852663.1\| DNA-binding transcriptional repressor MarR [Escherichia coli APEC O1],... gi\|191174136, gi... - gi\|75237131\|ref\|ZP_00721181.1\| COG1846: Transcriptional regulators [Escherichia coli F11], gi\|191174... gi\|218365201, gi... - gi\|218558432\|ref\|YP_002391345.1\| DNA-binding transcriptional repressor MarR [Escherichia coli S88], ... gi\|215264814, gi... - gi\|215486742\|ref\|YP_002329173.1\| DNA-binding transcriptional repressor MarR [Escherichia coli O127:H... gi\|91072346, gi\|... - gi\|91210772\|ref\|YP_540758.1\| DNA-binding transcriptional repressor MarR [Escherichia coli UTI89], gi... gi\|237705500, gi... - gi\|237705500\|ref\|ZP_04535981.1\| multiple antibiotic resistance protein MarR [Escherichia sp. 3_2_53F... gi\|110641691, gi... - gi\|110641691\|ref\|YP_669421.1\| DNA-binding transcriptional repressor MarR [Escherichia coli 536], gi\|...	126.0	[0..1]	[144..1]
gi\|168774235, gi... - gi\|187770006\|gb\|EDU33850.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H7 st... gi\|168768934, gi... - gi\|189361966\|gb\|EDU80385.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H7 st... gi\|124498909, gi... - gi\|124530910\|ref\|ZP_01701388.1\| transcriptional regulator, MarR family [Escherichia coli B], gi\|1244... gi\|189371762, gi... - gi\|189371762\|gb\|EDU90178.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H7 st... gi\|168781508, gi... - gi\|189000932\|gb\|EDU69918.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H7 st... gi\|169755069, gi... - gi\|170020141\|ref\|YP_001725095.1\| DNA-binding transcriptional repressor MarR [Escherichia coli ATCC 8... gi\|75257796, gi\|... - gi\|75257796\|ref\|ZP_00729281.1\| COG1846: Transcriptional regulators [Escherichia coli E22], gi\|193064... gi\|189378124, gi... - gi\|189378124\|gb\|EDU96540.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H7 st... gi\|193067109, gi... - gi\|75239840\|ref\|ZP_00723801.1\| COG1846: Transcriptional regulators [Escherichia coli E110019], gi\|19... gi\|195937021 - gi\|195937021\|ref\|ZP_03082403.1\| DNA-binding transcriptional repressor MarR [Escherichia coli O157:H7... gi\|191164972, gi... - gi\|75231713\|ref\|ZP_00718054.1\| COG1846: Transcriptional regulators [Escherichia coli B7A], gi\|191164... gi\|170683414, gi... - gi\|170683414\|ref\|YP_001743694.1\| multiple antibiotic resistance protein MarR [Escherichia coli SMS-3... gi\|161486491 - gi\|161486491\|ref\|NP_837240.2\| DNA-binding transcriptional repressor MarR [Shigella flexneri 2a str. ... gi\|13384163 - gi\|13384163\|gb\|AAK21292.1\|AF337816_2 MarR [Escherichia coli] gi\|161367610 - gi\|161367610\|ref\|NP_287622.2\| DNA-binding transcriptional repressor MarR [Escherichia coli O157:H7 E... gi\|161984932 - gi\|161984932\|ref\|YP_408084.2\| DNA-binding transcriptional repressor MarR [Shigella boydii Sb227] gi\|161950114 - gi\|161950114\|ref\|YP_403216.2\| DNA-binding transcriptional repressor MarR [Shigella dysenteriae Sd197... gi\|168748866, gi... - gi\|188016646\|gb\|EDU54768.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H7 st... gi\|161986526 - gi\|161986526\|ref\|YP_310531.2\| DNA-binding transcriptional repressor MarR [Shigella sonnei Ss046] gi\|168761376, gi... - gi\|189368107\|gb\|EDU86523.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H7 st... gi\|168756177, gi... - gi\|189356713\|gb\|EDU75132.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H7 st... gi\|218370163, gi... - gi\|218700177\|ref\|YP_002407806.1\| DNA-binding transcriptional repressor MarR [Escherichia coli IAI39]... gi\|218351799, gi... - gi\|218695067\|ref\|YP_002402734.1\| DNA-binding transcriptional repressor MarR [Escherichia coli 55989]... gi\|218705014, gi... - gi\|218705014\|ref\|YP_002412533.1\| DNA-binding transcriptional repressor MarR [Escherichia coli UMN026... gi\|15724200 - gi\|15724200\|gb\|AAL06492.1\|AF411963_2 MarR [Shigella flexneri] gi\|38703989 - gi\|38703989\|ref\|NP_310164.2\| repressor of mar operon [Escherichia coli O157:H7] gi\|26108209, gi\|... - gi\|26247807\|ref\|NP_753847.1\| DNA-binding transcriptional repressor MarR [Escherichia coli CFT073], g... gi\|194415999, gi... - gi\|75212898\|ref\|ZP_00712896.1\| COG1846: Transcriptional regulators [Escherichia coli B171], gi\|19442... gi\|208733061, gi... - gi\|208816413\|ref\|ZP_03257592.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H... gi\|75195625, gi\|... - gi\|75195625\|ref\|ZP_00705695.1\| COG1846: Transcriptional regulators [Escherichia coli HS], gi\|1571610... gi\|208724584, gi... - gi\|208811078\|ref\|ZP_03252911.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H... gi\|157158832, gi... - gi\|75190583\|ref\|ZP_00703850.1\| COG1846: Transcriptional regulators [Escherichia coli E24377A], gi\|15... gi\|209400719, gi... - gi\|209400719\|ref\|YP_002270528.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:... gi\|187730965, gi... - gi\|75178603\|ref\|ZP_00698649.1\| COG1846: Transcriptional regulators [Shigella boydii BS512], gi\|18773... gi\|208818844, gi... - gi\|208818844\|ref\|ZP_03259164.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H... gi\|217317518, gi... - gi\|217329079\|ref\|ZP_03445159.1\| multiple antibiotic resistance protein MarR [Escherichia coli O157:H... gi\|209912070, gi... - gi\|209918811\|ref\|YP_002292895.1\| DNA-binding transcriptional repressor MarR [Escherichia coli SE11],... gi\|218689420, gi... - gi\|218689420\|ref\|YP_002397632.1\| DNA-binding transcriptional repressor MarR [Escherichia coli ED1a],... gi\|218554063, gi... - gi\|218554063\|ref\|YP_002386976.1\| DNA-binding transcriptional repressor MarR [Escherichia coli IAI1],... gi\|38703989 - gi\|38703989\|ref\|NP_310164.2\| DNA-binding transcriptional repressor MarR [Escherichia coli O157:H7 st... gi\|110615099, gi... - gi\|110805551\|ref\|YP_689071.1\| DNA-binding transcriptional repressor MarR [Shigella flexneri 5 str. 8... gi\|227886085, gi... - gi\|227886085\|ref\|ZP_04003890.1\| DNA-binding transcriptional repressor MarR [Escherichia coli 83972],... gi\|254793075, gi... - gi\|254793075\|ref\|YP_003077912.1\| DNA-binding transcriptional repressor of multiple antibiotic resist...	126.0	[0..1]	[144..1]
gi\|83570910, gi\|... - gi\|83570910\|ref\|ZP_00922352.1\| COG1846: Transcriptional regulators [Shigella dysenteriae 1012], gi\|1...	125.0	[0..1]	[144..1]
gi\|254288389, gi... - gi\|254288389\|ref\|YP_003054137.1\| DNA-binding transcriptional repressor of multiple antibiotic resist... gi\|253973485, gi... - gi\|254161584\|ref\|YP_003044692.1\| DNA-binding transcriptional repressor of multiple antibiotic resist... EG11435 - transcriptional repressor of multiple antibiotic resistance / Transcription repressor of multiple an... MARR_ECOLI - Multiple antibiotic resistance protein marR - Escherichia coli gi\|169889032, gi... - gi\|170081197\|ref\|YP_001730517.1\| DNA-binding transcriptional repressor of multiple antibiotic resist... EG11435 - transcriptional repressor of multiple antibiotic resistance / Transcription repressor of multiple an... gi\|89108371, gi\|... - gi\|89108371\|ref\|AP_002151.1\| DNA-binding transcriptional repressor [Escherichia coli str. K-12 subst... gi\|194436640, gi... - gi\|83587881\|ref\|ZP_00926507.1\| COG1846: Transcriptional regulators [Escherichia coli 101-1], gi\|1944... gi\|75512518, gi\|... - gi\|75512518\|ref\|ZP_00735041.1\| COG1846: Transcriptional regulators [Escherichia coli 53638], gi\|1884... gi\|238900750, gi... - gi\|238900750\|ref\|YP_002926546.1\| DNA-binding transcriptional repressor of multiple antibiotic resist... gi\|242377276, gi... - gi\|251785003\|ref\|YP_002999307.1\| hypothetical protein B21_01500 [Escherichia coli BL21], gi\|24237727...	124.0	[0..1]	[144..1]
gi\|11245238 - gi\|11245238\|gb\|AAG33516.1\|AF302680_1 repressor marR [Enterobacter cloacae]	124.0	[0..1]	[144..1]
gi\|88924688, gi\|... - gi\|88945717\|ref\|ZP_01148883.1\| regulatory protein, MarR [Desulfotomaculum reducens MI-1], gi\|8892468...	122.0	[0..2]	[143..9]
gi\|98662526 - gi\|98662526\|dbj\|GAA00614.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	121.0	[0..5]	[142..1]
gi\|89204438, gi\|... - gi\|89204438\|ref\|ZP_01183015.1\| regulatory protein, MarR [Bacillus weihenstephanensis KBAB4], gi\|8915... gi\|229010731, gi... - gi\|229010731\|ref\|ZP_04167928.1\| Transcriptional regulator, MarR [Bacillus mycoides DSM 2048], gi\|228... gi\|229166269, gi... - gi\|229166269\|ref\|ZP_04294028.1\| Transcriptional regulator, MarR [Bacillus cereus AH621], gi\|22861721... gi\|228651170, gi... - gi\|229132232\|ref\|ZP_04261088.1\| Transcriptional regulator, MarR [Bacillus cereus BDRD-ST196], gi\|228...	120.0	[0..1]	[142..1]
gi\|42736444, gi\|... - gi\|42780524\|ref\|NP_977771.1\| MarR family transcriptional regulator [Bacillus cereus ATCC 10987], gi\|...	120.0	[0..1]	[142..1]
gi\|229108891, gi... - gi\|229108891\|ref\|ZP_04238495.1\| Transcriptional regulator, MarR [Bacillus cereus Rock1-15], gi\|22867... gi\|228704690, gi... - gi\|229078620\|ref\|ZP_04211177.1\| Transcriptional regulator, MarR [Bacillus cereus Rock4-2], gi\|228704... gi\|229068986, gi... - gi\|229068986\|ref\|ZP_04202279.1\| Transcriptional regulator, MarR [Bacillus cereus F65185], gi\|2287140... gi\|229043176, gi... - gi\|229043176\|ref\|ZP_04190900.1\| Transcriptional regulator, MarR [Bacillus cereus AH676], gi\|22872618... gi\|229177842, gi... - gi\|229177842\|ref\|ZP_04305215.1\| Transcriptional regulator, MarR [Bacillus cereus 172560W], gi\|228605... gi\|229144039, gi... - gi\|229144039\|ref\|ZP_04272455.1\| Transcriptional regulator, MarR [Bacillus cereus BDRD-ST24], gi\|2286... gi\|229126752, gi... - gi\|229126752\|ref\|ZP_04255764.1\| Transcriptional regulator, MarR [Bacillus cereus BDRD-Cer4], gi\|2286... gi\|218162118, gi... - gi\|218234161\|ref\|YP_002366118.1\| transcriptional regulator, MarR family [Bacillus cereus B4264], gi\|... gi\|228821148, gi... - gi\|228938550\|ref\|ZP_04101158.1\| Transcriptional regulator, MarR [Bacillus thuringiensis serovar berl... gi\|218543090, gi... - gi\|218896367\|ref\|YP_002444778.1\| transcriptional regulator, MarR family [Bacillus cereus G9842], gi\|... gi\|206736716, gi... - gi\|206967796\|ref\|ZP_03228752.1\| transcriptional regulator, MarR family [Bacillus cereus AH1134], gi\|... gi\|228978042, gi... - gi\|228978042\|ref\|ZP_04138421.1\| Transcriptional regulator, MarR [Bacillus thuringiensis Bt407], gi\|2... gi\|228971429, gi... - gi\|228971429\|ref\|ZP_04132055.1\| Transcriptional regulator, MarR [Bacillus thuringiensis serovar thur... gi\|30019487, gi\|... - gi\|30019487\|ref\|NP_831118.1\| MarR family transcriptional regulator [Bacillus cereus ATCC 14579], gi\|... gi\|228801978, gi... - gi\|228957706\|ref\|ZP_04119451.1\| Transcriptional regulator, MarR [Bacillus thuringiensis serovar paki... gi\|228807739, gi... - gi\|228951816\|ref\|ZP_04113914.1\| Transcriptional regulator, MarR [Bacillus thuringiensis serovar kurs...	120.0	[0..1]	[142..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSTSDLFNE IIPLGRLIYM VNQKKDRLLN NYLSPLDITA TQFKVLCSIR CAGCITPVEL  60
   61 KKVLSVDLGA LTRMLDRLLC KGWIERLPNP NDKRGVLVKL TPDGAAICEQ CHQRPGQDLH 120
  121 QELTKNLTAD EVATLEYLLK KILP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	1jgsA
Description:	Multiple antibiotic resistance repressor, MarR
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits