YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|207342351
Organism:	Saccharomyces cerevisiae AWRI1631
Length:	741 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|207342351.

Description	E-value	Query Range	Subject Range
CTF18 - Subunit of a complex with Ctf8p that shares some subunits with Replication Factor C and is required ... gi\|190408309 - gi\|190408309\|gb\|EDV11574.1\| protein CHL12 [Saccharomyces cerevisiae RM11-1a] CTF18_YEAST - Chromosome transmission fidelity protein 18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)... gi\|207342351 - gi\|207342351\|gb\|EDZ70138.1\| YMR078Cp-like protein [Saccharomyces cerevisiae AWRI1631]	0.0	[1..741]	[1..741]
gi\|15920578, gi\|... - gi\|15920578\|ref\|NP_376247.1\| hypothetical protein ST0376 [Sulfolobus tokodaii str. 7], gi\|15621361\|d...	0.0	[49..654]	[82..644]
SAV_SULAC - Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIM... SAV_SULAC - Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE=3 SV=2	0.0	[49..654]	[116..677]
gi\|13813572, gi\|... - gi\|15897351\|ref\|NP_341956.1\| AAA ATPase family protein [Sulfolobus solfataricus P2], gi\|13813572\|gb\|... gi\|25289959 - pir\|\|C90186 AAA family ATPase [imported] - Sulfolobus solfataricus	0.0	[44..650]	[101..662]
Y1297_ARCFU - Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 ... Y1297_ARCFU, YC9... - (O28972) Cell division cycle protein 48 homolog AF1297, Cell division cycle protein 48 homolog AF_12...	0.0	[59..677]	[114..664]
gi\|18159541, gi\|... - gi\|18312110\|ref\|NP_558777.1\| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum str....	0.0	[12..659]	[55..649]
gi\|5106179, gi\|1... - gi\|5106179\|dbj\|BAA81490.1\| 699aa long hypothetical transitional endoplasmic reticulum ATPase [Aeropy... gi\|7435761 - pir\|\|B72479 probable transitional endoplasmic reticulum ATPase APE2474 - Aeropyrum pernix (strain K1...	0.0	[91..659]	[115..618]
YB56_METJA, Y115... - (Q58556) Cell division cycle protein 48 homolog MJ1156, Cell division cycle protein 48 homolog MJ115... Y1156_METJA - Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / ...	0.0	[112..659]	[165..647]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDTAPYIGS LGRSSLFDTG DIEQAPGNNA IGINEEDIHA FVSSTGETVQ LKKKPAKLAT  60
   61 GNISLYTNPD TVWRSDDTYG ININYLLDKI EASGDDRTNA QKTSPITGKI GSDTLWVEKW 120
  121 RP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.165202
Match:	1e32A_
Description:	Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [123-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKFLDLVGNE KTNRRMLGWL RQWTPAVFKE QLPKLPTEKE VSDMELDPLK RPPKKILLLH  60
   61 GPPGIGKTSV AHVIAKQSGF SVSEINASDE RAGPMVKEKI YNLLFNHTFD TNPVCLVADE 120
  121 IDGSIESGFI RILVDIMQSD IKATNKLLYG QPDKKDKKRK KKRSKLLTRP IICICNNLYA 180
  181 PSLEKLKPFC EIIAVKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.165202
Match:	1e32A_
Description:	Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [320-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSDTTLLERL NLICHKENMN IPIKAINDLI DLAQGDVRNC INNLQFLASN VDSRDSSASD  60
   61 KPACAKNTWA SSNKDSPISW FKIVNQLFRK DPHRDIKEQF YELLNQVELN GNSDRILQGC 120
  121 FN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.165202
Match:	1e32A_
Description:	Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [442-654]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IFPYVKYSDN GIRKPANISD WLFFHDLMYQ SMYAHNGELL RYSALVPLVF FQTFGDIANK  60
   61 DDIRMKNSEY EQRELKRANS DIVSLIMRHI SVQSPLMASF TDRKSLIFEI LPYLDSMISS 120
  121 DFNKIRNLKL KQAIMEELVQ LLKSFQLNLI QNRSEGFDVR GGLTIDPPID EVVLLNPKHI 180
  181 NEVQHKRANN LSSLLAKIEE NRAKKRHIDQ VTE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [655-741]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRLQSQEMHS KKVKTGLNSS SSTIDFFKNQ YGLLKQTQEL EETQKTIGSD ETNQADDCNQ  60
   61 TVKIWVKYNE GFSNAVRKNV TWNNLWE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits