YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|207344373
Organism:	Saccharomyces cerevisiae AWRI1631
Length:	686 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|207344373.

Description	E-value	Query Range	Subject Range
SLM2_YEAST - Phosphatidylinositol 4,5-bisphosphate-binding protein SLM2 OS=Saccharomyces cerevisiae (strain ATCC ... SLM2 - Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm1p; acts downstream of Mss4p in ...	604.0	[0..24]	[678..13]
gi\|49525794, gi\|... - gi\|50288115\|ref\|XP_446486.1\| unnamed protein product [Candida glabrata], gi\|49525794\|emb\|CAG59413.1\|... gi\|49525794 - gi\|49525794\|emb\|CAG59413.1\| unnamed protein product [Candida glabrata]	400.0	[0..1]	[680..1]
gi\|44982377 - gi\|44982377\|gb\|AAS51686.1\| ADL234Cp [Ashbya gossypii ATCC 10895] gi\|44982377, gi\|... - gi\|45187639\|ref\|NP_983862.1\| ADL234Cp [Ashbya gossypii ATCC 10895], gi\|44982377\|gb\|AAS51686.1\| ADL23...	390.0	[0..138]	[664..200]
gi\|49644390 - gi\|49644390\|emb\|CAG97962.1\| KLLA0F03839p [Kluyveromyces lactis] gi\|49644390, gi\|... - gi\|50310469\|ref\|XP_455254.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644390\|emb\|CAG9796...	380.0	[0..1]	[659..1]
SLM1_SCHPO - Cytoskeletal signaling protein slm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=slm1 P... SPAC637.13c - cytoskeletal signaling protein	350.0	[0..161]	[653..12]
gi\|114591214 - gi\|114591214\|ref\|XP_516962.2\| PREDICTED: centaurin, beta 2 [Pan troglodytes]	284.0	[0..213]	[627..207]
gi\|4688902 - gi\|4688902\|emb\|CAB41450.1\| centaurin beta2 [Homo sapiens]	281.0	[0..213]	[627..21]
gi\|109053897 - gi\|109053897\|ref\|XP_001093762.1\| PREDICTED: centaurin, beta 2 [Macaca mulatta]	280.0	[0..213]	[627..175]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNNTMTSA VSDMLSQQQL NLQHLHNLQQ HTRSMTSADH ANVLQQQQQQ QQQQQQQQQQ  60
   61 QQQSASFQNG SLTSDI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [77-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQQSYLNGQP VPSTSNSTFQ NNRTLTMNSG GLQGIISNGS PNIDSNTNVT IAVPDPNNNN  60
   61 GKQLQGKNSL TNTSILSRAR SSLQRQRLAQ QQQQQQDPRS PLVILVPTAA QPTDILAARF 120
  121 SAWRNVIKSV IVYLTEIASI QDEIVRQQLR LSHAVQFPFF SIENQYQPSS QEDKSVQK

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	8.56
Match:
Description:	No description for 1itwA was found.

Predicted Domain #3

Region A:
Residues: [255-409]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FFLPLGNGSI QDLPTILNQY HESLASSASK ASRELTNDVI PRLEDLRRDL IVKIKEIKSL  60
   61 QSDFKNSCSK ELQQTKQAMK QFQESLKDAR YSVPKQDPFL TKLALDRQIK KQLQEENFLH 120
  121 EAFDNLETSG AELEKIVVME IQNSLTIYAR LLGQE

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	8.56
Match:
Description:	No description for 1itwA was found.

Predicted Domain #4

Region A:
Residues: [410-467]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQLVFDILIS KLDSGFFNVD PQFEWDNFIS RDPNFLLPNL PMRTFKEIVY KYQFDPLT

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	8.59
Match:
Description:	No description for 1i5pA was found.

Predicted Domain #5

Region A:
Residues: [468-592]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YEIKSGFLER RSKFLKSYSK GYYVLTPNFL HEFKTADRKK DLVPVMSLAL SECTVTEHSR  60
   61 KNSTSSPNST GSDAKFVLHA KQNGIIRRGH NWVFKADSYE SMMSWFDNLK ILTSTSNIQD 120
  121 KYKFI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.39794
Match:	1fhwA
Description:	Grp1
Matching Structure (courtesy of the PDB):

Predicted Domain #6

Region A:
Residues: [593-686]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQKLNLNSDG KPKLTNNHTS INKYQLSNAN STMVENDEND DINSNYVGST VTPKLDNQTN  60
   61 TNTSMSSLPD TNDSELQDQV PNIYIQTPIN DFKS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits