| Protein: | gi|190405254 |
| Organism: | Saccharomyces cerevisiae RM11-1a |
| Length: | 252 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190405254.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..252] | [1..252] |
|
|
2.0E-96 | [20..251] | [35..266] |
|
|
1.0E-91 | [6..252] | [116..359] |
|
|
2.0E-89 | [12..252] | [8..239] |
|
|
1.0E-84 | [15..252] | [16..244] |
|
|
2.0E-80 | [1..252] | [1..229] |
|
|
7.0E-75 | [17..252] | [3..231] |
|
|
1.0E-70 | [18..252] | [68..298] |
|
|
3.0E-57 | [37..252] | [3..224] |
|
|
5.0E-55 | [37..252] | [3..224] |
|
Region A: Residues: [1-61] |
1 11 21 31 41 51
| | | | | |
1 MVEDSRVRDA LKGGDQKALP ASLVPQAPPV LTSKDKITKR MIVVLAMASL ETHKISSNGP 60
61 G
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.759 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.723 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.597 | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.622 | g.27.1 | Fibronectin type I module |
| View | Download | 0.580 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.555 | a.20.1 | PGBD-like |
| View | Download | 0.554 | b.122.1 | PUA domain-like |
| View | Download | 0.527 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.508 | a.4.1 | Homeodomain-like |
| View | Download | 0.495 | d.46.1 | Transcription-state regulator AbrB, the N-terminal DNA recognition domain |
| View | Download | 0.493 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.405 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.361 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.348 | a.140.1 | LEM domain |
| View | Download | 0.312 | d.188.1 | Prokaryotic ribosomal protein L17 |
| View | Download | 0.305 | a.39.1 | EF-hand |
| View | Download | 0.296 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.275 | a.64.1 | Saposin |
| View | Download | 0.264 | a.22.1 | Histone-fold |
| View | Download | 0.251 | d.237.1 | Hypothetical protein YjiA, C-terminal domain |
| View | Download | 0.230 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.217 | d.68.3 | SirA-like |
| Term | Confidence | Notes |
| RNA methyltransferase activity | 3.73300070859272 | bayes_pls_golite062009 |
| tRNA methyltransferase activity | 2.75506106783732 | bayes_pls_golite062009 |
| methyltransferase activity | 2.52574509568717 | bayes_pls_golite062009 |
| transferase activity, transferring one-carbon groups | 2.44351066049012 | bayes_pls_golite062009 |
| S-adenosylmethionine-dependent methyltransferase activity | 2.00166711852993 | bayes_pls_golite062009 |
| RNA binding | 1.99948490385053 | bayes_pls_golite062009 |
| tRNA (guanine) methyltransferase activity | 1.9680534181971 | bayes_pls_golite062009 |
| rRNA methyltransferase activity | 1.94772102267592 | bayes_pls_golite062009 |
| binding | 1.07947949398964 | bayes_pls_golite062009 |
| nucleic acid binding | 0.987186921436979 | bayes_pls_golite062009 |
| catalytic activity | 0.797300463760338 | bayes_pls_golite062009 |
| transferase activity | 0.489526737652591 | bayes_pls_golite062009 |
| rRNA (guanine) methyltransferase activity | 0.425953878527171 | bayes_pls_golite062009 |
| protein binding | 0.303628351374506 | bayes_pls_golite062009 |
|
Region A: Residues: [62-252] |
1 11 21 31 41 51
| | | | | |
1 GDKYVLLNCD DHQGLLKKMG RDISEARPDI THQCLLTLLD SPINKAGKLQ VYIQTSRGIL 60
61 IEVNPTVRIP RTFKRFSGLM VQLLHKLSIR SVNSEEKLLK VIKNPITDHL PTKCRKVTLS 120
121 FDAPVIRVQD YIEKLDDDES ICVFVGAMAR GKDNFADEYV DEKVGLSNYP LSASVACSKF 180
181 CHGAEDAWNI L
|
| Detection Method: | |
| Confidence: | 94.481486 |
| Match: | PF03587 |
| Description: | Nep1 ribosome biogenesis protein |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
