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Protein Overview: CE19133

General Information:
Name(s) found: CE19133 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00012652 Ribosomal RNA small subunit methyltransferase nep-1 status:Confirmed UniProt:Q9XX15 protein_id:CAA21025.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 231 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHEYDTVAP PNAKRMKTDN QLEDKKILYV VLEGCSLETA KVGGEYAILS SDKHANFLRK  60
   61 QKKDPADYRP DILHQCLLNL LDSPLNRAGK LRVFFRTSKN VLVDVSPQCR IPRTFDRFCG 120
  121 LMVQLLHKLS IRAAETTQKL MSVVKNPVSN HLPVGSRKML MSFNVPELTM ANKLVAPETD 180
  181 EPLVLIIGGI ARGKIVVDYN DSETKISNYP LSAALTCAKV TSGLEEIWGI I

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..231] PSI-BLAST 91.69897 No description for 2v3kA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.595660793867997 bayes_pls_golite062009
  • protein binding
    		•  0.303628351374506 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle