YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166009307, gi...
Organism:	Yersinia pestis biovar Antiqua str. E1979001
Length:	315 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166009307, gi....

Description	E-value	Query Range	Subject Range
gi\|77359997, gi\|... - gi\|77359997\|ref\|YP_339572.1\| ribose-phosphate pyrophosphokinase [Pseudoalteromonas haloplanktis TAC1...	0.0	[1..315]	[1..315]
gi\|54309998, gi\|... - gi\|54309998\|ref\|YP_131018.1\| ribose-phosphate pyrophosphokinase [Photobacterium profundum SS9], gi\|4...	0.0	[1..315]	[1..315]
gi\|56460037, gi\|... - gi\|56460037\|ref\|YP_155318.1\| ribose-phosphate pyrophosphokinase [Idiomarina loihiensis L2TR], gi\|561...	0.0	[4..315]	[1..312]
gi\|85059858, gi\|... - gi\|85059858\|ref\|YP_455560.1\| ribose-phosphate pyrophosphokinase [Sodalis glossinidius str. 'morsitan...	0.0	[1..315]	[1..315]
gi\|90437077, gi\|... - gi\|90581723\|ref\|ZP_01237510.1\| ribose-phosphate pyrophosphokinase [Vibrio angustum S14], gi\|90437077... gi\|89051040, gi\|... - gi\|89073087\|ref\|ZP_01159626.1\| ribose-phosphate pyrophosphokinase [Photobacterium sp. SKA34], gi\|890...	0.0	[1..315]	[1..315]
gi\|85692927, gi\|... - gi\|85713258\|ref\|ZP_01044283.1\| ribose-phosphate pyrophosphokinase [Idiomarina baltica OS145], gi\|856...	0.0	[4..315]	[1..312]
gi\|227111326 - gi\|227111326\|ref\|ZP_03824982.1\| ribose-phosphate pyrophosphokinase [Pectobacterium carotovorum subsp... gi\|49611639, gi\|... - gi\|50121113\|ref\|YP_050280.1\| ribose-phosphate pyrophosphokinase [Pectobacterium atrosepticum SCRI104... gi\|253688504, gi... - gi\|253688504\|ref\|YP_003017694.1\| ribose-phosphate pyrophosphokinase [Pectobacterium carotovorum subs...	0.0	[1..315]	[1..315]
gi\|59711371, gi\|... - gi\|59711371\|ref\|YP_204147.1\| ribose-phosphate pyrophosphokinase [Vibrio fischeri ES114], gi\|59479472... gi\|197335710, gi... - gi\|197335710\|ref\|YP_002155525.1\| ribose-Phosphate pyrophosphokinase [Vibrio fischeri MJ11], gi\|19731...	0.0	[2..315]	[19..332]
gi\|90326145, gi\|... - gi\|90412786\|ref\|ZP_01220786.1\| ribose-phosphate pyrophosphokinase [Photobacterium profundum 3TCK], g...	1.0E-99	[1..315]	[1..315]
KPRS_VIBPA - Ribose-phosphate pyrophosphokinase OS=Vibrio parahaemolyticus GN=prs PE=3 SV=1 KPRS_VIBPA - Ribose-phosphate pyrophosphokinase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) G...	1.0E-99	[1..314]	[1..314]

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Predicted Domain #1

Region A:
Residues: [1-315]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDMKLFAGN ATPELAQRIA NRLYTSLGDA AVGRFSDGEV SVQINENVRG GDIFIIQSTC  60
   61 APTNDNLMEL VVMVDALRRA SAGRITAVIP YFGYARQDRR VRSARVPITA KVVADFLSSV 120
  121 GVDRVLTVDL HAEQIQGFFD VPVDNVFGSP ILLEDMLQQN LENPIVVSPD IGGVVRARAI 180
  181 AKLLNDTDMA IIDKRRPRAN VSQVMHIIGD VAGRDCVLVD DMIDTGGTLC KAAEALKERG 240
  241 AKRVFAYATH PIFSGNAVDN IRNSVIDEVI VCDTIPLSAE IKALKNVRTL TLSGMLAEAI 300
  301 RRISNEESIS AMFEH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	95.69897
Match:	1dkrA
Description:	Phosphoribosylpyrophosphate synthetase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
adenine phosphoribosyltransferase activity	4.07252508868782	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.91023158228049	bayes_pls_golite062009
hypoxanthine phosphoribosyltransferase activity	3.89356447922614	bayes_pls_golite062009
uracil phosphoribosyltransferase activity	3.0470646511978	bayes_pls_golite062009
transferase activity	2.73727660668741	bayes_pls_golite062009
nucleobase binding	2.70671399975507	bayes_pls_golite062009
purine binding	2.63033967717893	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.53679639481311	bayes_pls_golite062009
catalytic activity	2.30431811394775	bayes_pls_golite062009
orotate phosphoribosyltransferase activity	2.02298774328915	bayes_pls_golite062009
amidophosphoribosyltransferase activity	1.6596316647688	bayes_pls_golite062009
ribose phosphate diphosphokinase activity	1.51875493459374	bayes_pls_golite062009
diphosphotransferase activity	0.749909396904601	bayes_pls_golite062009
binding	0.656467565014233	bayes_pls_golite062009
transcription regulator activity	0.499710217109617	bayes_pls_golite062009
nucleic acid binding	0.489833405048501	bayes_pls_golite062009
DNA binding	0.263777463202573	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: