YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213425632
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213425632.

Description	E-value	Query Range	Subject Range
gi\|207858472, gi... - gi\|207858472\|ref\|YP_002245123.1\| hypothetical protein SEN3057 [Salmonella enterica subsp. enterica s... gi\|205354129, gi... - gi\|205354129\|ref\|YP_002227930.1\| hypothetical protein SG3111 [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=yqjI] [protein=putative transcriptional regulator] [protein_id=YP_005239390.1] [location=33984... gi\|16766514, gi\|... - gi\|16766514\|ref\|NP_462129.1\| putative transcriptional regulator [Salmonella typhimurium LT2], gi\|164...	4.0E-44	[1..214]	[2..215]
gi\|224585017, gi... - gi\|224585017\|ref\|YP_002638816.1\| hypothetical protein SPC_3290 [Salmonella enterica subsp. enterica ... gi\|62129364, gi\|... - gi\|62181731\|ref\|YP_218148.1\| putative transcriptional regulator [Salmonella enterica subsp. enterica...	4.0E-44	[1..214]	[2..215]
gi\|197364084, gi... - gi\|197364084\|ref\|YP_002143721.1\| hypothetical protein SSPA2879 [Salmonella enterica subsp. enterica ... gi\|197211293, gi... - gi\|197247590\|ref\|YP_002148144.1\| transcriptional regulator, PadR family [Salmonella enterica subsp. ... gi\|195633453, gi... - gi\|195633453\|gb\|EDX51867.1\| transcriptional regulator, PadR family [Salmonella enterica subsp. enter... gi\|205348372, gi... - gi\|205348372\|gb\|EDZ35003.1\| transcriptional regulator, PadR family [Salmonella enterica subsp. enter... gi\|56129411, gi\|... - gi\|56415154\|ref\|YP_152229.1\| hypothetical protein SPA3083 [Salmonella enterica subsp. enterica serov...	6.0E-44	[1..214]	[1..214]
gi\|187428413, gi... - gi\|75176046\|ref\|ZP_00696214.1\| COG1695: Predicted transcriptional regulators [Shigella boydii BS512]...	4.0E-42	[1..214]	[1..207]
gi\|74313606, gi\|... - gi\|74313606\|ref\|YP_312025.1\| hypothetical protein SSON_3209 [Shigella sonnei Ss046], gi\|73857083\|gb\|...	1.0E-41	[1..214]	[1..207]
gi\|82778400, gi\|... - gi\|82778400\|ref\|YP_404749.1\| hypothetical protein SDY_3255 [Shigella dysenteriae Sd197], gi\|81242548...	2.0E-41	[1..214]	[1..207]
gi\|218706695, gi... - gi\|218706695\|ref\|YP_002414214.1\| putative transcriptional regulator [Escherichia coli UMN026], gi\|21... gi\|190907502, gi... - gi\|75240898\|ref\|ZP_00724796.1\| COG1695: Predicted transcriptional regulators [Escherichia coli F11],... gi\|110643314, gi... - gi\|110643314\|ref\|YP_671044.1\| hypothetical protein ECP_3161 [Escherichia coli 536], gi\|110344906\|gb\|... gi\|209759198, gi... - gi\|209759204\|gb\|ACI77914.1\| hypothetical protein ECs3953 [Escherichia coli], gi\|209759198\|gb\|ACI7791... gi\|26249655, gi\|... - gi\|26249655\|ref\|NP_755695.1\| hypothetical protein c3824 [Escherichia coli CFT073], gi\|26110083\|gb\|AA... gi\|209920543, gi... - gi\|209920543\|ref\|YP_002294627.1\| hypothetical protein ECSE_3352 [Escherichia coli SE11], gi\|20991380...	3.0E-41	[1..214]	[1..207]
gi\|192932370, gi... - gi\|75260003\|ref\|ZP_00731281.1\| COG1695: Predicted transcriptional regulators [Escherichia coli E22],... gi\|193067372, gi... - gi\|75239359\|ref\|ZP_00723330.1\| COG1695: Predicted transcriptional regulators [Escherichia coli E1100... gi\|194427659, gi... - gi\|75211024\|ref\|ZP_00711137.1\| COG1695: Predicted transcriptional regulators [Escherichia coli B171]... gi\|218696775, gi... - gi\|218696775\|ref\|YP_002404442.1\| putative transcriptional regulator [Escherichia coli 55989], gi\|218... gi\|195183258 - gi\|195183258\|dbj\|BAG66801.1\| predicted transcriptional regulator [Escherichia coli O111:H-]	4.0E-41	[1..214]	[1..207]
gi\|169753606, gi... - gi\|170018678\|ref\|YP_001723632.1\| PadR-like family transcriptional regulator [Escherichia coli ATCC 8... gi\|83584794, gi\|... - gi\|83584794\|ref\|ZP_00923455.1\| COG1695: Predicted transcriptional regulators [Escherichia coli 101-1... gi\|170082613, gi... - gi\|170082613\|ref\|YP_001731933.1\| transcriptional regulator [Escherichia coli str. K-12 substr. DH10B... gi\|253974918, gi... - gi\|254163017\|ref\|YP_003046125.1\| predicted transcriptional regulator [Escherichia coli B str. REL606... gi\|75197024, gi\|... - gi\|75197024\|ref\|ZP_00707094.1\| COG1695: Predicted transcriptional regulators [Escherichia coli HS], ... gi\|218362408, gi... - gi\|218555640\|ref\|YP_002388553.1\| putative transcriptional regulator [Escherichia coli IAI1], gi\|2183... gi\|253979074, gi... - gi\|254289767\|ref\|YP_003055515.1\| predicted transcriptional regulator [Escherichia coli BL21(DE3)], g... gi\|75230012, gi\|... - gi\|75230012\|ref\|ZP_00716525.1\| COG1695: Predicted transcriptional regulators [Escherichia coli B7A],... gi\|218371830, gi... - gi\|218701844\|ref\|YP_002409473.1\| putative transcriptional regulator [Escherichia coli IAI39], gi\|218... gi\|242378620, gi... - gi\|251786347\|ref\|YP_003000651.1\| hypothetical protein B21_02890 [Escherichia coli BL21], gi\|24237862... gi\|75513284, gi\|... - gi\|75513284\|ref\|ZP_00735708.1\| COG1695: Predicted transcriptional regulators [Escherichia coli 53638... gi\|238902181, gi... - gi\|238902181\|ref\|YP_002927977.1\| putative transcriptional regulator [Escherichia coli BW2952], gi\|23... gi\|82545326, gi\|... - gi\|82545326\|ref\|YP_409273.1\| hypothetical protein SBO_2930 [Shigella boydii Sb227], gi\|81246737\|gb\|A... EG12954 - PadR family putative transcriptional regulator / Transcriptional repressor for yqjH, nickel- or iron... YQJI_SHIFL - Uncharacterized protein YqjI OS=Shigella flexneri GN=yqjI PE=4 SV=1 YQJI_ECOLI - Hypothetical protein yqjI - Escherichia coli gi\|124526019, gi... - gi\|124526019\|ref\|ZP_01698024.1\| transcriptional regulator, PadR-like family [Escherichia coli B], gi... gi\|110806957, gi... - gi\|110806957\|ref\|YP_690477.1\| hypothetical protein SFV_3112 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|89109840, gi\|... - gi\|89109840\|ref\|AP_003620.1\| predicted transcriptional regulator [Escherichia coli str. K-12 substr.... gi\|30042674, gi\|... - gi\|30064417\|ref\|NP_838588.1\| hypothetical protein S3318 [Shigella flexneri 2a str. 2457T], gi\|300426... EG12954 - PadR family putative transcriptional regulator / Transcriptional repressor for yqjH, nickel- or iron... gi\|24053535, gi\|... - gi\|24114369\|ref\|NP_708879.1\| hypothetical protein SF3112 [Shigella flexneri 2a str. 301], gi\|2405353...	4.0E-41	[1..214]	[1..207]
gi\|157078183, gi... - gi\|75187880\|ref\|ZP_00701147.1\| COG1695: Predicted transcriptional regulators [Escherichia coli E2437...	5.0E-41	[1..214]	[1..207]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNQHEGCCK NQDHKHDGCC KDREHQHEGC HSAHQHENAS CGGEHRHGHG CGRHGQGGGR  60
   61 RQRFFGHGEL RLVILDILTR DASHGYELIK AIENLTGGGY TPSAGVIYPT LDFLQDQQFI 120
  121 TISDEEGGRK KIAITANGAQ WLDENREHLT HIQARLKARC VGMELRKNPQ MKRALDNFKA 180
  181 VLDLRINHSD INDAQIKRII GVIDRAALEI AELD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	1yg2A
Description:	Structure of the Vibrio cholerae virulence activator AphA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.835523092977445	bayes_pls_golite062009
transcription regulator activity	0.4843036104266	bayes_pls_golite062009
nucleic acid binding	0.37117756729668	bayes_pls_golite062009
DNA binding	0.3118855114645	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: