YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190407680
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190407680.

Description	E-value	Query Range	Subject Range
gi\|25309714 - pir\|\|E95867 conserved hypothetical protein [imported] - Sinorhizobium meliloti (strain 1021) magapla... gi\|16263953, gi\|... - gi\|16263953\|ref\|NP_436745.1\| hypothetical protein SM_b20212 [Sinorhizobium meliloti 1021], gi\|151400...	4.0E-55	[2..236]	[1..226]
gi\|21244216, gi\|... - gi\|21244216\|ref\|NP_643798.1\| NonF-related protein [Xanthomonas axonopodis pv. citri str. 306], gi\|21...	1.0E-49	[5..234]	[2..223]
gi\|28870706, gi\|... - gi\|28870706\|ref\|NP_793325.1\| ThiJ/PfpI family protein [Pseudomonas syringae pv. tomato str. DC3000],... gi\|213968996, gi... - gi\|213968996\|ref\|ZP_03397136.1\| ThiJ/PfpI family protein [Pseudomonas syringae pv. tomato T1], gi\|21... tr\|Q87Z85\|Q87Z85... - ThiJ/PfpI family protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_3545 PE=4 SV=1	5.0E-49	[5..235]	[2..224]
HSP31 - Possible chaperone and cysteine protease with similarity to E. coli Hsp31; member of the DJ-1/ThiJ/P... HSP31_YEAST - Glutathione-independent glyoxalase HSP31 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...	9.0E-49	[1..236]	[1..236]
gi\|30022577, gi\|... - gi\|30022577\|ref\|NP_834208.1\| ThiJ/PfpI family protein [Bacillus cereus ATCC 14579], gi\|29898135\|gb\|A...	9.0E-49	[1..236]	[1..227]
gi\|30250191, gi\|... - gi\|30250191\|ref\|NP_842261.1\| ThiJ/PfpI family protein [Nitrosomonas europaea ATCC 19718], gi\|3018098...	4.0E-48	[2..236]	[1..226]
gi\|26989214, gi\|... - gi\|26989214\|ref\|NP_744639.1\| ThiJ/PfpI family protein [Pseudomonas putida KT2440], gi\|24984056\|gb\|AA...	1.0E-47	[5..235]	[2..224]
gi\|21114611, gi\|... - gi\|21232789\|ref\|NP_638706.1\| NonF-related protein [Xanthomonas campestris pv. campestris str. ATCC 3... gi\|188990232, gi... - gi\|188990232\|ref\|YP_001902242.1\| hypothetical protein xccb100_0837 [Xanthomonas campestris pv. campe... gi\|66767137, gi\|... - gi\|66767137\|ref\|YP_241899.1\| NonF-related protein [Xanthomonas campestris pv. campestris str. 8004],...	2.0E-47	[5..234]	[2..223]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPKRALISL TSYHGPFYKD GAKTGVFVVE ILRSFDTFEK HGFEVDFVSE TGGFGWDEHY  60
   61 LPKSFIGGED KMNFETKNSA FNKALARIKT ANEVNASDYK IFFASAGHGA LFDYPKAKNL 120
  121 QDIASKIYAN GGVIAAICHG PLLFDGLIDI KTTRPLIEGK AITGFPLEGE IALGVDDILR 180
  181 SRKLTTVERV ANKNGAKYLA PIHPWDDYSI TDGKLVTGVN ANSSYSTTIR AINALYS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.9897
Match:	1n57A_
Description:	HSP31 (HchA; YedU)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.761311388604334	bayes_pls_golite062009
binding	0.674707430307546	bayes_pls_golite062009
ligase activity	0.314215307503825	bayes_pls_golite062009
hydrolase activity	0.132707384514464	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: