YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224500668
Organism:	Listeria monocytogenes Finland 1998
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224500668.

Description	E-value	Query Range	Subject Range
YQGF_LISMC - Putative pre-16S rRNA nuclease OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=Lm4b_0151... RUVX_LISMC - Putative Holliday junction resolvase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=Lm4... gi\|254852126 - gi\|254852126\|ref\|ZP_05241474.1\| Holliday junction resolvase-like protein [Listeria monocytogenes FSL... gi\|254824439 - gi\|254824439\|ref\|ZP_05229440.1\| Holliday junction resolvase-like protein [Listeria monocytogenes FSL... gi\|255521191 - gi\|255521191\|ref\|ZP_05388428.1\| Holliday junction resolvase-like protein [Listeria monocytogenes FSL... gi\|254879009 - gi\|254879009\|ref\|ZP_05251719.1\| Holliday junction resolvase-like protein [Listeria monocytogenes FSL... YQGF_LISMF - Putative pre-16S rRNA nuclease OS=Listeria monocytogenes serotype 4b (strain F2365) GN=LMOf2365_1521... gi\|153166936, gi... - gi\|153166936\|ref\|ZP_01927376.1\| conserved hypothetical protein [Listeria monocytogenes FSL N1-017], ... gi\|47093424, gi\|... - gi\|47093424\|ref\|ZP_00231189.1\| conserved hypothetical protein TIGR00250 [Listeria monocytogenes str.... gi\|153202427, gi... - gi\|254931437\|ref\|ZP_05264796.1\| Holliday junction resolvase-like protein [Listeria monocytogenes HPB...	186.0	[0..1]	[138..1]
RUVX_LISIN - Putative Holliday junction resolvase OS=Listeria innocua GN=lin1537 PE=3 SV=1 YQGF_LISIN - Putative pre-16S rRNA nuclease OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=lin1537 PE=3 SV...	185.0	[0..1]	[138..1]
gi\|228747663, gi... - gi\|229013604\|ref\|ZP_04170735.1\| Holliday junction resolvase [Bacillus mycoides DSM 2048], gi\|2287476... gi\|228717234, gi... - gi\|229062082\|ref\|ZP_04199407.1\| Holliday junction resolvase [Bacillus cereus AH603], gi\|228717234\|gb... gi\|229032036, gi... - gi\|229032036\|ref\|ZP_04188019.1\| Holliday junction resolvase [Bacillus cereus AH1271], gi\|228729281\|g... gi\|228614358, gi... - gi\|229169130\|ref\|ZP_04296845.1\| Holliday junction resolvase [Bacillus cereus AH621], gi\|228614358\|gb... YQGF_BACWK - Putative pre-16S rRNA nuclease OS=Bacillus weihenstephanensis (strain KBAB4) GN=BcerKBAB4_4233 PE=3 ... gi\|228648251, gi... - gi\|229135209\|ref\|ZP_04264008.1\| Holliday junction resolvase [Bacillus cereus BDRD-ST196], gi\|2286482... gi\|229175060, gi... - gi\|229175060\|ref\|ZP_04302578.1\| Holliday junction resolvase [Bacillus cereus MM3], gi\|228608428\|gb\|E...	184.0	[0..1]	[136..1]
gi\|228974484, gi... - gi\|228974484\|ref\|ZP_04135051.1\| Holliday junction resolvase [Bacillus thuringiensis serovar thuringi... gi\|228799022, gi... - gi\|228960658\|ref\|ZP_04122303.1\| Holliday junction resolvase [Bacillus thuringiensis serovar pakistan... gi\|228987638, gi... - gi\|228987638\|ref\|ZP_04147752.1\| Holliday junction resolvase [Bacillus thuringiensis serovar tochigie... gi\|228981078, gi... - gi\|228981078\|ref\|ZP_04141379.1\| Holliday junction resolvase [Bacillus thuringiensis Bt407], gi\|22877... gi\|229081651, gi... - gi\|229081651\|ref\|ZP_04214146.1\| Holliday junction resolvase [Bacillus cereus Rock4-2], gi\|228701655\|... gi\|206969800, gi... - gi\|206969800\|ref\|ZP_03230754.1\| conserved hypothetical protein TIGR00250 [Bacillus cereus AH1134], g... gi\|229048094, gi... - gi\|229048094\|ref\|ZP_04193667.1\| Holliday junction resolvase [Bacillus cereus AH676], gi\|228723249\|gb... gi\|229192598, gi... - gi\|229192598\|ref\|ZP_04319559.1\| Holliday junction resolvase [Bacillus cereus ATCC 10876], gi\|2285909... gi\|228602807, gi... - gi\|229180662\|ref\|ZP_04308002.1\| Holliday junction resolvase [Bacillus cereus 172560W], gi\|228602807\|... gi\|228954671, gi... - gi\|228954671\|ref\|ZP_04116694.1\| Holliday junction resolvase [Bacillus thuringiensis serovar kurstaki... gi\|47556604, gi\|... - gi\|47566574\|ref\|ZP_00237396.1\| conserved hypothetical protein protein TIGR00250 [Bacillus cereus G92... gi\|228818110, gi... - gi\|228941554\|ref\|ZP_04104103.1\| Holliday junction resolvase [Bacillus thuringiensis serovar berliner...	184.0	[0..1]	[136..1]
gi\|882478 - gi\|882478\|gb\|AAA69116.1\| ORF_o180; was also ORF_o62p before splice gi\|882478\|gb\|AAA... - ORF_o180; was also ORF_o62p before splice	184.0	[0..3]	[136..47]
gi\|228923138, gi... - gi\|228923138\|ref\|ZP_04086429.1\| Holliday junction resolvase [Bacillus thuringiensis serovar huazhong... gi\|229129667, gi... - gi\|229129667\|ref\|ZP_04258635.1\| Holliday junction resolvase [Bacillus cereus BDRD-Cer4], gi\|22865378... YQGF_BACC4 - Putative pre-16S rRNA nuclease OS=Bacillus cereus (strain B4264) GN=BCB4264_A4506 PE=3 SV=1 gi\|228636556, gi... - gi\|229146957\|ref\|ZP_04275321.1\| Holliday junction resolvase [Bacillus cereus BDRD-ST24], gi\|22863655... gi\|228711191, gi... - gi\|229071895\|ref\|ZP_04205106.1\| Holliday junction resolvase [Bacillus cereus F65185], gi\|228711191\|g... gi\|229111859, gi... - gi\|229111859\|ref\|ZP_04241405.1\| Holliday junction resolvase [Bacillus cereus Rock1-15], gi\|228671615... YQGF_BACCR - Putative pre-16S rRNA nuclease OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 1530... gi\|228630851, gi... - gi\|229152590\|ref\|ZP_04280779.1\| Holliday junction resolvase [Bacillus cereus m1550], gi\|228630851\|gb...	183.0	[0..1]	[136..1]
YQGF_BACHK - Putative pre-16S rRNA nuclease OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=BT9727_4... YQGF_BACCZ - Putative pre-16S rRNA nuclease OS=Bacillus cereus (strain ZK / E33L) GN=BCE33L4130 PE=3 SV=1 gi\|47529912, gi\|... - gi\|47529912\|ref\|YP_021261.1\| Holliday junction resolvase-like protein [Bacillus anthracis str. 'Ames... gi\|49187278, gi\|... - gi\|49187278\|ref\|YP_030530.1\| Holliday junction resolvase-like protein [Bacillus anthracis str. Stern... YQGF_BACAH - Putative pre-16S rRNA nuclease OS=Bacillus thuringiensis (strain Al Hakam) GN=BALH_3971 PE=3 SV=1 gi\|196044968, gi... - gi\|196044968\|ref\|ZP_03112202.1\| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108], ... YQGF_BACC0 - Putative pre-16S rRNA nuclease OS=Bacillus cereus (strain AH820) GN=BCAH820_4466 PE=3 SV=1 gi\|30259114, gi\|... - gi\|30264456\|ref\|NP_846833.1\| Holliday junction resolvase-like protein [Bacillus anthracis str. Ames]... YQGF_BACC1 - Putative pre-16S rRNA nuclease OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=BCE_4469 PE=3 SV=... gi\|165872754, gi... - gi\|165872754\|ref\|ZP_02217382.1\| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0... gi\|21402430, gi\|... - gi\|65321754\|ref\|ZP_00394713.1\| COG0816: Predicted endonuclease involved in recombination (possible H... gi\|167638500, gi... - gi\|167638500\|ref\|ZP_02396776.1\| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0... gi\|172081497, gi... - gi\|177653215\|ref\|ZP_02935467.1\| conserved hypothetical protein TIGR00250 [Bacillus anthracis str. A0... gi\|190561951, gi... - gi\|190566960\|ref\|ZP_03019876.1\| conserved hypothetical protein TIGR00250 [Bacillus anthracis Tsianko... gi\|195993021, gi... - gi\|196034479\|ref\|ZP_03101888.1\| conserved hypothetical protein TIGR00250 [Bacillus cereus W], gi\|195... gi\|196039375, gi... - gi\|196039375\|ref\|ZP_03106681.1\| conserved hypothetical protein TIGR00250 [Bacillus cereus NVH0597-99... gi\|254757706 - gi\|254757706\|ref\|ZP_05209733.1\| Holliday junction resolvase-like protein [Bacillus anthracis str. Au... gi\|254741527 - gi\|254741527\|ref\|ZP_05199214.1\| Holliday junction resolvase-like protein [Bacillus anthracis str. Kr... gi\|254736489 - gi\|254736489\|ref\|ZP_05194195.1\| Holliday junction resolvase-like protein [Bacillus anthracis str. We... gi\|254724687 - gi\|254724687\|ref\|ZP_05186470.1\| Holliday junction resolvase-like protein [Bacillus anthracis str. A1... gi\|254684142 - gi\|254684142\|ref\|ZP_05148002.1\| Holliday junction resolvase-like protein [Bacillus anthracis str. CN... YQGF_BACAA - Putative pre-16S rRNA nuclease OS=Bacillus anthracis (strain A0248) GN=BAA_4634 PE=3 SV=1 gi\|229186626, gi... - gi\|229186626\|ref\|ZP_04313787.1\| Holliday junction resolvase [Bacillus cereus BGSC 6E1], gi\|228596885... gi\|228625455, gi... - gi\|229158002\|ref\|ZP_04286073.1\| Holliday junction resolvase [Bacillus cereus ATCC 4342], gi\|22862545... gi\|229123927, gi... - gi\|229123927\|ref\|ZP_04253119.1\| Holliday junction resolvase [Bacillus cereus 95/8201], gi\|228659229\|... gi\|229093457, gi... - gi\|229093457\|ref\|ZP_04224560.1\| Holliday junction resolvase [Bacillus cereus Rock3-42], gi\|228689928... gi\|228948100, gi... - gi\|228948100\|ref\|ZP_04110384.1\| Holliday junction resolvase [Bacillus thuringiensis serovar monterre... gi\|228823945, gi... - gi\|228935707\|ref\|ZP_04098520.1\| Holliday junction resolvase [Bacillus thuringiensis serovar andalous... YQGF_BACAN - Putative pre-16S rRNA nuclease OS=Bacillus anthracis GN=BA_4614 PE=3 SV=1 gi\|228830219, gi... - gi\|228929431\|ref\|ZP_04092452.1\| Holliday junction resolvase [Bacillus thuringiensis serovar pondiche... gi\|228842627, gi... - gi\|228917020\|ref\|ZP_04080580.1\| Holliday junction resolvase [Bacillus thuringiensis serovar pulsiens... YQGF_BACAC - Putative pre-16S rRNA nuclease OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=BAMEG_4651 PE=3... YQGF_BACC3 - Putative pre-16S rRNA nuclease OS=Bacillus cereus (strain 03BB102) GN=BCA_4498 PE=3 SV=1 RUVX_BACHK - Putative Holliday junction resolvase OS=Bacillus thuringiensis subsp. konkukian GN=BT9727_4119 PE=3 ...	182.0	[0..1]	[136..1]
YQGF_BACCN - Putative pre-16S rRNA nuclease OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH...	181.0	[0..1]	[136..1]
gi\|55739831, gi\|... - gb\|AAV63472.1\| DNA recombination protein, putative [Streptococcus thermophilus CNRZ1066], gb\|AAV615... YQGF_STRT1 - Putative pre-16S rRNA nuclease OS=Streptococcus thermophilus (strain CNRZ 1066) GN=str1960 PE=3 SV=1 YQGF_STRT2 - Putative pre-16S rRNA nuclease OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=st...	181.0	[0..1]	[137..1]
RUVX_STRA3 - Putative Holliday junction resolvase OS=Streptococcus agalactiae serotype III GN=gbs2044 PE=3 SV=1 RUVX_STRA1 - Putative Holliday junction resolvase OS=Streptococcus agalactiae serotype Ia GN=SAK_2029 PE=3 SV=2 YQGF_STRA1 - Putative pre-16S rRNA nuclease OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A909 / C... RUVX_STRA5 - Putative Holliday junction resolvase OS=Streptococcus agalactiae serotype V GN=SAG2090 PE=3 SV=1 YQGF_STRA3 - Putative pre-16S rRNA nuclease OS=Streptococcus agalactiae serotype III (strain NEM316) GN=gbs2044 P... YQGF_STRA5 - Putative pre-16S rRNA nuclease OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/...	180.0	[0..1]	[137..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIMGLDVGS KTVGVAISDP LGWTAQGVET IQIDENRKQF GYDRVKELVL EYEVEKVVVG  60
   61 LPKNMNNTIG PRAESSKIYA EVLEARIGLP VVLWDERLTT SAAERTLIEA DVSRKKRKEV 120
  121 IDKLAAVMIL QSYLDTTN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.0
Match:	1vhxA
Description:	Crystal structure of Putative Holliday junction resolvase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nuclease activity	1.80465910244067	bayes_pls_golite062009
catalytic activity	1.25233849524628	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.67622280196747	bayes_pls_golite062009
ribonuclease activity	0.567315548679559	bayes_pls_golite062009
exonuclease activity	0.550209133970558	bayes_pls_golite062009
hydrolase activity	0.482149639923564	bayes_pls_golite062009
endonuclease activity	0.164428265680495	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: