YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|221316395
Organism: Bacillus subtilis subsp. subtilis str. NCIB 3610
Length: 252 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221316395.

Description E-value Query
Range
Subject
Range
gi|16800960 - gi|16800960|ref|NP_471228.1| hypothetical protein lin1894 [Listeria innocua Clip11262]
gi|25289128, gi|... - pir||AD1669 3'-exo-deoxyribonuclease exoA homolog lin1894 [imported] - Listeria innocua (strain Clip...
246.0 [0..1] [252..1]

Back

Predicted Domain #1
Region A:
Residues: [1-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLISWNVNG LRAVMRKMDF LSYLKEEDAD IICLQETKIQ DGQVDLQPED YHVYWNYAVK  60
   61 KGYSGTAVFS KQEPLQVIYG IGVEEHDQEG RVITLEFENV FVMTVYTPNS RRGLERIDYR 120
  121 MQWEEALLSY ILELDQKKPV ILCGDLNVAH QEIDLKNPKA NRNNAGFSDQ EREAFTRFLE 180
  181 AGFVDSFRHV YPDLEGAYSW WSYRAGARDR NIGWRIDYFV VSESLKEQIE DASISADVMG 240
  241 SDHCPVELII NI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.0
Match: 2isiA
Description: No description for 2isiA was found.

Predicted functions:

Term Confidence Notes
exonuclease activity 2.70644978530491 bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 2.57658637220545 bayes_pls_golite062009
deoxyribonuclease activity 2.54419310609558 bayes_pls_golite062009
hydrolase activity 2.50832753420463 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 2.36841783202726 bayes_pls_golite062009
exodeoxyribonuclease activity 1.8139951607534 bayes_pls_golite062009
exodeoxyribonuclease activity, producing 5'-phosphomonoesters 1.7967853371745 bayes_pls_golite062009
nuclease activity 1.78432551160775 bayes_pls_golite062009
catalytic activity 1.76511376991978 bayes_pls_golite062009
binding 1.74593496417303 bayes_pls_golite062009
DNA binding 0.961734136090079 bayes_pls_golite062009
nucleic acid binding 0.947430734766989 bayes_pls_golite062009
transcription regulator activity 0.597390739522692 bayes_pls_golite062009
transcription coactivator activity 0.58571720340663 bayes_pls_golite062009
protein binding 0.476649214025345 bayes_pls_golite062009
inositol or phosphatidylinositol phosphatase activity 0.228910502815798 bayes_pls_golite062009
phosphoric ester hydrolase activity 0.100365481550461 bayes_pls_golite062009
phosphatase activity 0.00559251346312178 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle