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View Structure Prediction Details

Protein: gi|221323901
Organism: Bacillus subtilis subsp. subtilis str. SMY
Length: 488 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221323901.

Description E-value Query
Range
Subject
Range
gi|242232502, gi... - gi|242256019|ref|ZP_04800917.1| Glycine dehydrogenase (decarboxylating) [Thermoanaerobacter sp. X513...
gi|167038898, gi... - gi|167038898|ref|YP_001661883.1| glycine dehydrogenase subunit 2 [Thermoanaerobacter sp. X514], gi|1...
414.0 [0..7] [483..6]

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Predicted Domain #1
Region A:
Residues: [1-488]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQDQALIF ELSREGRIGY SLPELDVPEI ELGDLLSDTY IRDEDAALPE VSELDIMRHY  60
   61 TALSKRNHGV DSGFYPLGSC TMKYNPKINE KIARIPGFAA IHPLQDEDTV QGALELLYDL 120
  121 SKHLEEITGM DEVTLQPAAG AHGEWTGLMM IRAYHEARGD FKRTKVIVPD SAHGTNPASA 180
  181 TVAGFETVTV KSNEKGLVDL EDLKRAVNEE TAALMLTNPN TLGLFEEQIT EMAEIVHQAG 240
  241 GKLYYDGANL NAVLSKARPG DMGFDVVHLN LHKTFTGPHG GGGPGSGPVG VKQDLIPYLP 300
  301 KPVLVKKEGR FTFDYDRPHA IGRVKPYYGN FGINVRAYTY IRSMGPDGLK AVTENAVLNA 360
  361 NYMMRKLAPY YDLPFDRHCK HEFVLSGKRQ KKLGVRTLDI AKRLLDFGYH PPTIYFPLNV 420
  421 EECIMIEPTE TESKETLDAF IDAMIQIAKE AEENPELVQE APHTTIVKRM DETKAARHPV 480
  481 LRYEAEER

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.30103
Match: 1wytB
Description: Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.66922865456094 bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity 2.10290066978837 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 2.10290066978837 bayes_pls_golite062009
transferase activity, transferring nitrogenous groups 1.85532625717753 bayes_pls_golite062009
transaminase activity 1.83482013760414 bayes_pls_golite062009
transferase activity 0.93810038069762 bayes_pls_golite062009
glycine hydroxymethyltransferase activity 0.71980637947887 bayes_pls_golite062009
methyltransferase activity 0.58373273750311 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.51745245786841 bayes_pls_golite062009
O-phospho-L-serine:2-oxoglutarate aminotransferase activity 0.38671377495281 bayes_pls_golite062009
lyase activity 0.0414385380659299 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle