YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|207340354
Organism:	Saccharomyces cerevisiae AWRI1631
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|207340354.

Description	E-value	Query Range	Subject Range
gi\|190408003 - gi\|190408003\|gb\|EDV11268.1\| iron sulfur assembly protein 2 [Saccharomyces cerevisiae RM11-1a] gi\|207340354 - gi\|207340354\|gb\|EDZ68730.1\| YPR067Wp-like protein [Saccharomyces cerevisiae AWRI1631] ISA2 - Protein required for maturation of mitochondrial and cytosolic Fe/S proteins, localizes to the mitoc... ISA2_YEAST - Iron-sulfur assembly protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISA2 PE=1...	1.0E-44	[1..185]	[1..185]
gi\|26987580, gi\|... - gi\|26987580\|ref\|NP_743005.1\| iron-sulfur cluster assembly protein IscA [Pseudomonas putida KT2440], ... gi\|126317906, gi... - gi\|167031902\|ref\|YP_001667133.1\| iron-sulfur cluster assembly protein IscA [Pseudomonas putida GB-1]... tr\|E4R524\|E4R524... - IscA OS=Pseudomonas putida (strain BIRD-1) GN=iscA PE=3 SV=1 tr\|I7C0T3\|I7C0T3... - Iron-sulfur cluster assembly protein IscA OS=Pseudomonas putida (strain DOT-T1E) GN=iscA PE=3 SV=1 gi\|148510176, gi... - gi\|82738432\|ref\|ZP_00901265.1\| HesB/YadR/YfhF:Iron-sulphur cluster assembly protein IscA [Pseudomona...	1.0E-34	[57..183]	[1..107]
gi\|91209227, gi\|... - gi\|91209227\|ref\|YP_539213.1\| iron-sulfur cluster insertion protein ErpA [Escherichia coli UTI89], gi... gi\|26246102, gi\|... - gi\|26246102\|ref\|NP_752141.1\| iron-sulfur cluster insertion protein ErpA [Escherichia coli CFT073], g...	1.0E-34	[40..183]	[1..125]
gi\|126208405, gi... - gi\|126208405\|ref\|YP_001053630.1\| iron-binding protein IscA [Actinobacillus pleuropneumoniae L20], gi... gi\|190150256, gi... - gi\|190150256\|ref\|YP_001968781.1\| iron-binding protein IscA [Actinobacillus pleuropneumoniae serovar ... gi\|165976348, gi... - gi\|165976348\|ref\|YP_001651941.1\| iron-binding protein [Actinobacillus pleuropneumoniae serovar 3 str... gi\|32034039 - gi\|32034039\|ref\|ZP_00134283.1\| COG0316: Uncharacterized conserved protein [Actinobacillus pleuropneu...	1.0E-34	[57..183]	[1..107]
gi\|27360021, gi\|... - gi\|27363904\|ref\|NP_759432.1\| HesB family protein [Vibrio vulnificus CMCP6], gi\|27360021\|gb\|AAO08959....	2.0E-34	[57..183]	[1..107]
ISCAP_ARATH - Iron-sulfur assembly protein IscA, chloroplastic OS=Arabidopsis thaliana GN=ISCA PE=2 SV=2	3.0E-34	[8..184]	[14..179]
gi\|22298410, gi\|... - gi\|22298410\|ref\|NP_681657.1\| hypothetical protein tll0867 [Thermosynechococcus elongatus BP-1], gi\|2...	4.0E-34	[53..182]	[6..117]
gi\|33148430, gi\|... - gi\|33152208\|ref\|NP_873561.1\| hesB family protein [Haemophilus ducreyi 35000HP], gi\|33148430\|gb\|AAP95...	4.0E-34	[57..183]	[1..107]
gi\|12720557, gi\|... - gi\|15602185\|ref\|NP_245257.1\| hypothetical protein PM0320 [Pasteurella multocida subsp. multocida str...	5.0E-34	[57..183]	[1..107]
gi\|11279039 - pir\|\|H81089 HesB/YadR/YfhF family protein NMB1381 [imported] - Neisseria meningitidis (strain MC58 s... gi\|15677244, gi\|... - gi\|7226622\|gb\|AAF41749.1\| HesB/YadR/YfhF family protein [Neisseria meningitidis MC58], gi\|15677244\|r...	6.0E-34	[39..183]	[3..126]

Back

Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAKLLFTRL NFRRPSTTLR QFPLTCFLFH SKAFYSDLVT KEPLITPKRI INKTPGLNLS  60
   61 ISERASNRLA EIYRNSKENL RISVESGGCH GFQYNLTLEP ATKPDIKNDV KDKEFSDDLD 120
  121 DDDSKDIIYV LPEDKGRVII DSKSLNILNN TTLTYTNELI GSSFKIINGS LKSSCGCGSS 180
  181 FDIEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	127.0103
Match:	1nwbA_
Description:	Hypothetical protein Aq 1857
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.946497535495414	bayes_pls_golite062009
transition metal ion binding	0.538168598935332	bayes_pls_golite062009
iron ion binding	0.124887686699639	bayes_pls_golite062009
protein binding	0.095614303446809	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: