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View Structure Prediction Details

Protein: gi|218189011
Organism: Oryza sativa Indica Group
Length: 254 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218189011.

Description E-value Query
Range
Subject
Range
gi|92873186 - gi|92873186|gb|ABE81683.1| DNA-binding WRKY [Medicago truncatula]
171.0 [0..9] [236..14]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLQLQGDD HDDEALPHFP YFAVPSPPPL AVAPAASATT SDGHQHGPLE VLEQPPCSNN  60
   61 LHPDGLVDGP QLAATTAVPM MLPAMTSLDW QSLLQTCLQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [100-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPPPVLEQQQ PAAAAQADQY SGENDHGDLQ AAESSGAGNK EKQVMAKGGA GRPSGTKKKA  60
   61 SRPRFAFQTR SDNDILDDGY RWRKYGQKAV KNSKHPRSYY RCTHHTCNVK KQVQRLAKDT 120
  121 SIVVTTYEGV HNHPCEKLME ALTPILKQLQ FLSQF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.39794
Match: 1wj2A
Description: Solution Structure of the C-terminal WRKY Domain of AtWRKY4
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle