YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|207345547
Organism:	Saccharomyces cerevisiae AWRI1631
Length:	958 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|207345547.

Description	E-value	Query Range	Subject Range
gi\|151943591 - gi\|151943591\|gb\|EDN61901.1\| vacuolar import and degradation protein [Saccharomyces cerevisiae YJM789... VID30 - Protein involved in proteasome-dependent catabolite degradation of fructose-1,6-bisphosphatase (FBPa... gi\|190407161 - gi\|190407161\|gb\|EDV10428.1\| vacuolar import and degradation protein VID30 [Saccharomyces cerevisiae ... gi\|207345547 - gi\|207345547\|gb\|EDZ72330.1\| YGL227Wp-like protein [Saccharomyces cerevisiae AWRI1631] VID30_YEAST - Vacuolar import and degradation protein 30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ...	0.0	[1..958]	[1..958]
RANB9_MOUSE - Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE=1 SV=1	2.0E-65	[440..654]	[105..329]
RANBP9 - RAN binding protein 9	2.0E-65	[440..654]	[180..404]
RANB9_XENLA - Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1	2.0E-64	[440..654]	[35..256]
gi\|20465559, gi\|... - gi\|30681041\|ref\|NP_192672.2\| SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis t...	2.0E-63	[441..669]	[45..279]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	8.0E-60	[427..641]	[1019..1260]

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Predicted Domain #1

Region A:
Residues: [1-47]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEYMDDVDR EFINCLFPSY LLQQPVAYDL WILYLQHRKL FHKLKNT

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [270-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QYYPPDQSPS SSFSSPRVSS GNDKNDNEAT NVLSNSGSKK KNSMIPDIYK ILGYFLPSRW  60
   61 QAQPNNSLQL SQDGITHLQP

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.3
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #2

Region A:
Residues: [48-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLINADENPT GVGMGRTKLT ALTRKEIWSK LMNLGVLGTI SFEAVNDDYL IQVYKYFYPD  60
   61 VNDFTLRFGV KDS

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.3
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #3

Region A:
Residues: [121-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKNSVRVMKA SSDMRKNAQE LLEPVLSERE MALNSNTSLE NDRNDDDDDD DDDDDDDDDD  60
   61 DDDDDESDLE SLEGEVDTD

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.3
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #4

Region A:
Residues: [200-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDDNNEGDGS DNHEEGGEEG SRGADADVSS AQQRAERVAD PWIYQRSRSA INIETESRNL  60
   61 WDTSDKNSGL

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.3
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #5

Region A:
Residues: [350-420]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPDYHSYMTY ERSSASSAST RNRLRTSFEN SGKVDFAVTW ANKSLPDNKL TIFYYEIKVL  60
   61 SVTSTESAEN S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.886	0.037	regulation of nitrogen utilization	g.41.3	Zinc beta-ribbon

Predicted Domain #6

Region A:
Residues: [421-672]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIVIGYKLVE NELMEATTKK SVSRSSVAGS SSSLGGSNNM SSNRVPSTSF TMEGTQRRDY  60
   61 IYEGGVSAMS LNVDGSINKC QKYGFDLNVF GYCGFDGLIT NSTEQSKEYA KPFGRDDVIG 120
  121 CGINFIDGSI FFTKNGIHLG NAFTDLNDLE FVPYVALRPG NSIKTNFGLN EDFVFDIIGY 180
  181 QDKWKSLAYE HICRGRQMDV SIEEFDSDES EEDETENGPE ENKSTNVNED LMDIDQEDGA 240
  241 AGNKDTKKLN DE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7

Region A:
Residues: [673-958]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDNNLKFLLG EDNRFIDGKL VRPDVNNINN LSVDDGSLPN TLNVMINDYL IHEGLVDVAK  60
   61 GFLKDLQKDA VNVNGQHSES KDVIRHNERQ IMKEERMVKI RQELRYLINK GQISKCINYI 120
  121 DNEIPDLLKN NLELVFELKL ANYLVMIKKS SSKDDDEIEN LILKGQELSN EFIYDTKIPQ 180
  181 SLRDRFSGQL SNVSALLAYS NPLVEAPKEI SGYLSDEYLQ ERLFQVSNNT ILTFLHKDSE 240
  241 CALENVISNT RAMLSTLLEY NAFGSTNSSD PRYYKAINFD EDVLNL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits