YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|221230139, gi...
Organism:	Mycobacterium leprae Br4923
Length:	467 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221230139, gi....

Description	E-value	Query Range	Subject Range
gi\|119701970 - gi\|119701970\|gb\|EAX13997.1\| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi\|254551177 - gi\|254551177\|ref\|ZP_05141624.1\| hypothetical protein Mtube_12046 [Mycobacterium tuberculosis '98-R60... gi\|121638023, gi... - gi\|121638023\|ref\|YP_978247.1\| hypothetical protein BCG_2158c [Mycobacterium bovis BCG str. Pasteur 1... gi\|255096947 - gi\|255096947\|ref\|ZP_05326425.1\| hypothetical protein MtubK_12110 [Mycobacterium tuberculosis KZN 605... gi\|194544351, gi... - gi\|254232299\|ref\|ZP_04925626.1\| conserved hypothetical protein [Mycobacterium tuberculosis C], gi\|19... gi\|254815960 - gi\|254815960\|ref\|ZP_05220961.1\| hypothetical protein MtubKZN_09412 [Mycobacterium tuberculosis KZN 4... gi\|31793321, gi\|... - gi\|31793321\|ref\|NP_855814.1\| hypothetical protein Mb2165c [Mycobacterium bovis AF2122/97], gi\|316189... gi\|224990517, gi... - gi\|224990517\|ref\|YP_002645204.1\| hypothetical protein JTY_2152 [Mycobacterium bovis BCG str. Tokyo 1... gi\|7448969 - gi\|7448969\|pir\|\|A70578 probable dapE2 protein - Mycobacterium tuberculosis (strain H37RV) gi\|219558119 - gi\|219558119\|ref\|ZP_03537195.1\| hypothetical protein MtubT1_12777 [Mycobacterium tuberculosis T17] gi\|13881883, gi\|... - gi\|15841632\|ref\|NP_336669.1\| hypothetical protein MT2199 [Mycobacterium tuberculosis CDC1551], gi\|13... gi\|218753864 - gi\|218753864\|ref\|ZP_03532660.1\| hypothetical protein MtubG1_10689 [Mycobacterium tuberculosis GM 150... gi\|15609278, gi\|... - gi\|57116951\|ref\|YP_177864.1\| hypothetical protein Rv2141c [Mycobacterium tuberculosis H37Rv], gi\|384... gi\|215446369 - gi\|215446369\|ref\|ZP_03433121.1\| hypothetical protein MtubT_10663 [Mycobacterium tuberculosis T85] gi\|148506108, gi... - gi\|167967857\|ref\|ZP_02550134.1\| hypothetical protein MtubH3_07416 [Mycobacterium tuberculosis H37Ra]... gi\|215431070 - gi\|215431070\|ref\|ZP_03428989.1\| hypothetical protein MtubE_10420 [Mycobacterium tuberculosis EAS054] gi\|215427519 - gi\|215427519\|ref\|ZP_03425438.1\| hypothetical protein MtubT9_14479 [Mycobacterium tuberculosis T92] gi\|215411856 - gi\|215411856\|ref\|ZP_03420640.1\| hypothetical protein Mtub9_11069 [Mycobacterium tuberculosis 94_M424... gi\|215403527 - gi\|215403527\|ref\|ZP_03415708.1\| hypothetical protein Mtub0_07568 [Mycobacterium tuberculosis 02_1987...	277.0	[0..20]	[467..1]
gi\|81253871 - gi\|81253871\|ref\|ZP_00878402.1\| COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desucci... gi\|123215699, gi... - gi\|76784027\|ref\|ZP_00771214.1\| COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desucci...	277.0	[0..15]	[467..2]
gi\|119695347, gi... - gi\|92915680\|ref\|ZP_01284303.1\| Peptidase M20:Peptidase dimerisation [Mycobacterium sp. KMS], gi\|9244... gi\|108800130, gi... - gi\|108800130\|ref\|YP_640327.1\| hypothetical protein Mmcs_3164 [Mycobacterium sp. MCS], gi\|108770549\|g...	276.0	[0..32]	[467..9]
gi\|126235555, gi... - gi\|92907914\|ref\|ZP_01276693.1\| Peptidase M20:Peptidase dimerisation [Mycobacterium sp. JLS], gi\|9243...	275.0	[0..32]	[467..9]
gi\|41407984, gi\|... - gi\|41407984\|ref\|NP_960820.1\| hypothetical protein MAP1886c [Mycobacterium avium subsp. paratuberculo... gi\|254775022 - gi\|254775022\|ref\|ZP_05216538.1\| hypothetical protein MaviaA2_10159 [Mycobacterium avium subsp. avium... gi\|118163554, gi... - gi\|118462267\|ref\|YP_881553.1\| hypothetical protein MAV_2350 [Mycobacterium avium 104], gi\|118163554\|...	273.0	[0..18]	[467..2]
gi\|111017911, gi... - gi\|111017911\|ref\|YP_700883.1\| hypothetical protein RHA1_ro00892 [Rhodococcus jostii RHA1], gi\|110817...	272.0	[0..19]	[466..2]
gi\|54016387, gi\|... - gi\|54024879\|ref\|YP_119121.1\| hypothetical protein nfa29100 [Nocardia farcinica IFM 10152], gi\|540163...	272.0	[0..33]	[466..18]
gi\|145223624, gi... - gi\|89339066\|ref\|ZP_01191831.1\| Peptidase M20:Peptidase dimerisation [Mycobacterium flavescens PYR-GC...	257.0	[0..32]	[466..16]
gi\|145594691, gi... - gi\|145594691\|ref\|YP_001158988.1\| hypothetical protein Strop_2159 [Salinispora tropica CNB-440], gi\|1...	257.0	[0..32]	[467..14]
gi\|119957279, gi... - gi\|90206167\|ref\|ZP_01208803.1\| Peptidase M20:Peptidase dimerisation [Mycobacterium vanbaalenii PYR-1...	256.0	[0..39]	[466..2]

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Predicted Domain #1

Region A:
Residues: [1-467]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKTKVLRSL VVAVVGKVTV TVETDVLVNP SDDVVEVVSR LIRFDTTNTG DPETTRGEAE  60
   61 CAQWVASQLA EVGYQPEYLE SGAPGRGNVF ARLAGEDSSR GALLIHGHLD VVPAETAEWS 120
  121 VHPFSGAVEG GQVWGRGAID MKDMVGMMIV VARQLKQAGI APPRDLVFAF VADEEHGGSY 180
  181 GSQWLVDNRP DLFDGVTEAI GEVGGFSLTV PCRNGGERRL YLIETAEKGM QWMRLTARGR 240
  241 AGHGSMVHNQ NAVTAVAEAV ARLGRHQFPL VTTDTVVQFL AAISEETGLE FDIGSPDLEG 300
  301 AIEKLGPMAR MLKAVLYDTA NPTVLKAGYK VNVVPATAEA MVDCRILPGR QAAFEAAIDE 360
  361 LIGPDVTREW IKDLPPYETA FDGDLVDAMN AAVLAVDPDG RTVPYMASGG TDAKAFARLG 420
  421 IRCFGFTPLR LPPELDFTAL FHGVDERVSI DALKFGIDVL AHFLTHC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.30103
Match:	1vgyA
Description:	Crystal structure of succinyl diaminopimelate desuccinylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidase activity	3.53599751822623	bayes_pls_golite062009
hydrolase activity	3.17104798571343	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.83557334423635	bayes_pls_golite062009
catalytic activity	2.00064748759729	bayes_pls_golite062009
exopeptidase activity	0.960517137038552	bayes_pls_golite062009
binding	0.456088952797852	bayes_pls_golite062009
carboxypeptidase activity	0.389857234977383	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: