YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|214002583
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|214002583.

Description	E-value	Query Range	Subject Range
DEOC_PYRKO - Probable deoxyribose-phosphate aldolase OS=Pyrococcus kodakaraensis GN=deoC PE=3 SV=1 DEOC_THEKO - Deoxyribose-phosphate aldolase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)...	1.0E-72	[15..241]	[4..221]
gi\|89051696, gi\|... - gi\|89072592\|ref\|ZP_01159164.1\| deoxyribose-phosphate aldolase [Photobacterium sp. SKA34], gi\|8905169...	9.0E-72	[7..265]	[1..258]
gi\|56130598, gi\|... - gi\|56416341\|ref\|YP_153416.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica ser... gi\|62130618, gi\|... - gi\|62182985\|ref\|YP_219402.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica ser... gi\|205275067, gi... - gi\|205355286\|ref\|YP_002229087.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica... gi\|206711495, gi... - gi\|207859692\|ref\|YP_002246343.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica... gi\|197365263, gi... - gi\|197365263\|ref\|YP_002144900.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica... lcl\|NC_016856.1_... - [gene=deoC] [protein=deoxyribose-phosphate aldolase] [protein_id=YP_005240911.1] [location=4834246..... gi\|16767808, gi\|... - gi\|16767808\|ref\|NP_463423.1\| deoxyribose-phosphate aldolase [Salmonella typhimurium LT2], gi\|1642313... gi\|238910726 - gi\|238910726\|ref\|ZP_04654563.1\| deoxyribose-phosphate aldolase [Salmonella enterica subsp. enterica ...	2.0E-71	[1..265]	[1..265]
gi\|90581531, gi\|... - gi\|90581531\|ref\|ZP_01237324.1\| deoxyribose-phosphate aldolase [Vibrio angustum S14], gi\|90437293\|gb\|...	2.0E-71	[7..265]	[1..258]
gi\|167049868, gi... - gi\|167400500\|ref\|ZP_02306009.1\| deoxyribose-phosphate aldolase [Yersinia pestis biovar Antiqua str. ... gi\|165936509, gi... - gi\|165936509\|ref\|ZP_02225077.1\| deoxyribose-phosphate aldolase [Yersinia pestis biovar Orientalis st... gi\|166211998, gi... - gi\|166211998\|ref\|ZP_02238033.1\| deoxyribose-phosphate aldolase [Yersinia pestis biovar Antiqua str. ... gi\|21960724, gi\|... - gi\|22127614\|ref\|NP_671037.1\| deoxyribose-phosphate aldolase [Yersinia pestis KIM], gi\|21960724\|gb\|AA... gi\|45438346, gi\|... - gi\|45443477\|ref\|NP_995016.1\| deoxyribose-phosphate aldolase [Yersinia pestis biovar Microtus str. 91...	6.0E-70	[3..265]	[2..270]
gi\|90326540, gi\|... - gi\|90412503\|ref\|ZP_01220506.1\| deoxyribose-phosphate aldolase [Photobacterium profundum 3TCK], gi\|90...	2.0E-69	[7..265]	[1..257]
gi\|26111704, gi\|... - gi\|26251271\|ref\|NP_757311.1\| deoxyribose-phosphate aldolase [Escherichia coli CFT073], gi\|26111704\|g...	3.0E-69	[4..265]	[6..267]
gi\|91214097, gi\|... - gi\|91214097\|ref\|YP_544083.1\| deoxyribose-phosphate aldolase [Escherichia coli UTI89], gi\|91075671\|gb...	4.0E-69	[4..265]	[6..267]
gi\|56421034, gi\|... - gi\|56421034\|ref\|YP_148352.1\| deoxyribose-phosphate aldolase [Geobacillus kaustophilus HTA426], gi\|56...	6.0E-69	[15..238]	[53..264]
DEOC_PHOPR - Deoxyribose-phosphate aldolase OS=Photobacterium profundum (strain SS9) GN=deoC PE=3 SV=1 DEOC_PHOPR - Deoxyribose-phosphate aldolase OS=Photobacterium profundum GN=deoC PE=3 SV=1	6.0E-69	[7..265]	[1..257]

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Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLENVMTDL KASSLRALKL MDLTTLNDDD TNEKVIALCH QAKTPVGNTA AICIYPRFIP  60
   61 IARKTLKEQG TPDIRIATVT NFPHGNDDID IALAETRAAI AYGADEVDVV FPYRALIAGN 120
  121 EQVGFDLVKA CKDACAAANV LLKVIIETGE LKEEALIRKA SEISIKAGAD FIKTSTGKVP 180
  181 VNATPESARI MMEVIRDMGV SKTVGFKPAG GVRTAEDAQK FLAIADELFG ANWADSRHYR 240
  241 FGASSLLASL LKALGHGDGK SASSY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.09691
Match:	1jclA
Description:	Deoxyribose-phosphate aldolase DeoC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.67031204377352	bayes_pls_golite062009
deoxyribose-phosphate aldolase activity	2.42732299324236	bayes_pls_golite062009
kinase activity	1.94076427145239	bayes_pls_golite062009
fructose-bisphosphate aldolase activity	1.57588823292155	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	1.53236719840557	bayes_pls_golite062009
transaldolase activity	1.20024248197006	bayes_pls_golite062009
transferase activity	0.464721888799972	bayes_pls_golite062009
aldehyde-lyase activity	0.351872954170322	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: