YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220948108, gi...
Organism:	synthetic construct
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220948108, gi....

Description	E-value	Query Range	Subject Range
gi\|194188984, gi... - gi\|195480955\|ref\|XP_002101460.1\| GE15619 [Drosophila yakuba], gi\|194188984\|gb\|EDX02568.1\| GE15619 [D... gi\|194124190, gi... - gi\|195351650\|ref\|XP_002042347.1\| GM13336 [Drosophila sechellia], gi\|194124190\|gb\|EDW46233.1\| GM13336... gi\|220960346, gi... - gi\|220960346\|gb\|ACL92709.1\| RpS5a-PA [synthetic construct], gi\|220944650\|gb\|ACL84868.1\| RpS5a-PA [sy... FBpp0309958, FBp... - The gene Ribosomal protein S5a is referred to in FlyBase by the symbol Dmel\RpS5a (CG8922, FBgn00025... gi\|190649181, gi... - gi\|194891689\|ref\|XP_001977532.1\| GG18202 [Drosophila erecta], gi\|190649181\|gb\|EDV46459.1\| GG18202 [D...	292.0	[0..1]	[230..4]
gi\|29825585 - gi\|29825585\|gb\|AAO92286.1\| 40S ribosomal protein S5 [Dermacentor variabilis]	289.0	[0..22]	[230..3]
gi\|62125845 - gi\|62125845\|gb\|AAX63830.1\| ribosomal protein S5 [Trichoplusia ni]	286.0	[0..19]	[230..1]
gi\|109460985, gi... - gi\|109460985\|ref\|XP_001062647.1\| PREDICTED: similar to ribosomal protein S5 [Rattus norvegicus], gi\|...	284.0	[0..31]	[230..56]
gi\|54609291, gi\|... - gi\|54609291\|gb\|AAV34861.1\| ribosomal protein S5 [Bombyx mori], gi\|112984070\|ref\|NP_001037259.1\| ribo...	284.0	[0..19]	[230..1]
gi\|45269085 - gi\|45269085\|gb\|AAS55947.1\| 40S ribosomal protein S5 [Ornithodoros moubata]	283.0	[0..22]	[230..2]
gi\|48120555, gi\|... - gi\|66509908\|ref\|XP_624084.1\| PREDICTED: similar to ribosomal protein S5 isoform 2 [Apis mellifera], ...	283.0	[0..22]	[230..8]
gi\|16566728 - gi\|16566728\|gb\|AAL26581.1\|AF429979_1 ribosomal protein S5 [Spodoptera frugiperda]	283.0	[0..19]	[230..1]
gi\|51011494 - gi\|51011494\|gb\|AAT92156.1\| 40S ribosomal protein S5 [Ixodes pacificus] gi\|67083821, gi\|... - gi\|67083821\|gb\|AAY66845.1\| 40S ribosomal protein S5 [Ixodes scapularis], gi\|241735553\|ref\|XP_0024139...	282.0	[0..22]	[230..3]
gi\|15294021 - gi\|15294021\|gb\|AAK95187.1\|AF402813_1 40S ribosomal protein S5 [Ictalurus punctatus]	282.0	[0..32]	[230..5]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEVVESSS QEASQVIPQE QEDWADDVVT TMPAQEVTEW PEIKLFGRWA CDDISISDIS  60
   61 LQDYIAVKEK FARYLPH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.13
Match:	1iqvA
Description:	Ribosomal protein S7
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [78-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAGRYAAKRF RKAQCPIVER LTSGLMMKGR SNGKKLLACR IVKHAFEIIH LLTSENPLQV  60
   61 TVNAIVNSGP REDSTRIGRA GTVRRQAVDV SPLRRVNQAI WLICTGAREA AFRNIKTVAE 120
  121 CLADELINAA KGSSNSYAIK KKDELERVAK SNR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.39794
Match:	1s1hG
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits