YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194713775, gi...
Organism:	Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194713775, gi....

Description	E-value	Query Range	Subject Range
gi\|224470253, gi... - gi\|224585725\|ref\|YP_002639524.1\| branched-chain amino acid aminotransferase [Salmonella enterica sub... gi\|238912911 - gi\|238912911\|ref\|ZP_04656748.1\| branched-chain amino acid aminotransferase [Salmonella enterica subs... gi\|62182378, gi\|... - gi\|62182378\|ref\|YP_218795.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. ...	0.0	[1..309]	[1..309]
gi\|56415762, gi\|... - gi\|56415762\|ref\|YP_152837.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. ... gi\|197364691, gi... - gi\|197364691\|ref\|YP_002144328.1\| branched-chain amino acid aminotransferase [Salmonella enterica sub...	0.0	[1..307]	[1..307]
gi\|30064933, gi\|... - gi\|30064933\|ref\|NP_839104.1\| branched-chain amino acid aminotransferase [Shigella flexneri 2a str. 2... gi\|229774929 - gi\|229774929\|ref\|YP_691058.2\| branched-chain amino acid aminotransferase [Shigella flexneri 5 str. 8... gi\|24115065, gi\|... - gi\|24115065\|ref\|NP_709575.1\| branched-chain amino acid aminotransferase [Shigella flexneri 2a str. 3...	0.0	[1..308]	[1..308]
gi\|353522 - gi\|353522\|prf\|\|1104250A aminotransferase,branched chain AA	0.0	[1..308]	[7..314]
gi\|15833958, gi\|... - gi\|15833958\|ref\|NP_312731.1\| branched-chain amino acid aminotransferase [Escherichia coli O157:H7 st... gi\|168764152, gi... - gi\|189365801\|gb\|EDU84217.1\| branched-chain-amino-acid transaminase [Escherichia coli O157:H7 str. EC... gi\|168768048, gi... - gi\|189362606\|gb\|EDU81025.1\| branched-chain-amino-acid transaminase [Escherichia coli O157:H7 str. EC... gi\|168775682, gi... - gi\|187768857\|gb\|EDU32701.1\| branched-chain-amino-acid transaminase [Escherichia coli O157:H7 str. EC... gi\|168780666, gi... - gi\|189001483\|gb\|EDU70469.1\| branched-chain-amino-acid transaminase [Escherichia coli O157:H7 str. EC... gi\|168786605, gi... - gi\|189373449\|gb\|EDU91865.1\| branched-chain-amino-acid transaminase [Escherichia coli O157:H7 str. EC... EG10497 - branched-chain amino acid aminotransferase / Branched-chain amino acid aminotransferase; transaminas... gi\|168800987, gi... - gi\|189376781\|gb\|EDU95197.1\| branched-chain-amino-acid transaminase [Escherichia coli O157:H7 str. EC... gi\|170022201, gi... - gi\|170022201\|ref\|YP_001727155.1\| branched-chain amino acid aminotransferase [Escherichia coli ATCC 8... gi\|170083260, gi... - gi\|170083260\|ref\|YP_001732580.1\| branched-chain amino-acid aminotransferase [Escherichia coli str. K... gi\|124498674, gi... - gi\|124531297\|ref\|ZP_01701633.1\| branched-chain amino acid aminotransferase [Escherichia coli B], gi\|... gi\|168751728, gi... - gi\|188014269\|gb\|EDU52391.1\| branched-chain-amino-acid transaminase [Escherichia coli O157:H7 str. EC... gi\|168753664, gi... - gi\|189359192\|gb\|EDU77611.1\| branched-chain-amino-acid transaminase [Escherichia coli O157:H7 str. EC... gi\|15804361, gi\|... - gi\|15804361\|ref\|NP_290401.1\| branched-chain amino acid aminotransferase [Escherichia coli O157:H7 ED... gi\|217320766, gi... - gi\|217324545\|ref\|ZP_03440629.1\| branched-chain-amino-acid transaminase [Escherichia coli O157:H7 str... gi\|218551003, gi... - gi\|218551003\|ref\|YP_002384794.1\| branched-chain amino acid aminotransferase [Escherichia fergusonii ... gi\|218363102, gi... - gi\|218556333\|ref\|YP_002389247.1\| branched-chain amino acid aminotransferase [Escherichia coli IAI1],... gi\|218354220, gi... - gi\|218697488\|ref\|YP_002405155.1\| branched-chain amino acid aminotransferase [Escherichia coli 55989]... gi\|218371302, gi... - gi\|218701316\|ref\|YP_002408945.1\| branched-chain amino acid aminotransferase [Escherichia coli IAI39]... gi\|218434505, gi... - gi\|218707408\|ref\|YP_002414927.1\| branched-chain amino acid aminotransferase [Escherichia coli UMN026... gi\|75512669, gi\|... - gi\|75512669\|ref\|ZP_00735181.1\| COG0115: Branched-chain amino acid aminotransferase/4-amino-4-deoxych... gi\|170680330, gi... - gi\|170680330\|ref\|YP_001746091.1\| branched-chain-amino-acid transaminase [Escherichia coli SMS-3-5], ... ILVE_ECOL6 - Branched-chain-amino-acid aminotransferase OS=Escherichia coli O6 GN=ilvE PE=3 SV=2 gi\|195938059 - gi\|195938059\|ref\|ZP_03083441.1\| branched-chain amino acid aminotransferase [Escherichia coli O157:H7... gi\|157068925, gi... - gi\|75197660\|ref\|ZP_00707730.1\| COG0115: Branched-chain amino acid aminotransferase/4-amino-4-deoxych... gi\|208809559, gi... - gi\|208809559\|ref\|ZP_03251896.1\| branched-chain-amino-acid transaminase [Escherichia coli O157:H7 str... gi\|75234067, gi\|... - gi\|75234067\|ref\|ZP_00718480.1\| COG0115: Branched-chain amino acid aminotransferase/4-amino-4-deoxych... gi\|208735586, gi... - gi\|208814309\|ref\|ZP_03255638.1\| branched-chain-amino-acid transaminase [Escherichia coli O157:H7 str... gi\|89110246, gi\|... - gi\|89110246\|ref\|AP_004026.1\| branched-chain amino-acid aminotransferase [Escherichia coli str. K-12 ... gi\|208821928, gi... - gi\|208821928\|ref\|ZP_03262248.1\| branched-chain-amino-acid transaminase [Escherichia coli O157:H7 str... gi\|209158180, gi... - gi\|209396780\|ref\|YP_002273289.1\| branched-chain-amino-acid transaminase [Escherichia coli O157:H7 st... gi\|82779048, gi\|... - gi\|82779048\|ref\|YP_405397.1\| branched-chain amino acid aminotransferase [Shigella dysenteriae Sd197]... gi\|209921244, gi... - gi\|209921244\|ref\|YP_002295328.1\| branched-chain amino acid aminotransferase [Escherichia coli SE11],... gi\|81247536, gi\|... - gi\|82546125\|ref\|YP_410072.1\| branched-chain amino acid aminotransferase [Shigella boydii Sb227], gi\|... gi\|215267172, gi... - gi\|215489100\|ref\|YP_002331531.1\| branched-chain amino acid aminotransferase [Escherichia coli O127:H... gi\|227888645, gi... - gi\|227888645\|ref\|ZP_04006450.1\| branched-chain amino acid aminotransferase [Escherichia coli 83972],... gi\|238902853, gi... - gi\|238902853\|ref\|YP_002928649.1\| branched-chain amino-acid aminotransferase [Escherichia coli BW2952... gi\|226838674, gi... - gi\|254038983\|ref\|ZP_04873034.1\| branched-chain-amino-acid transaminase [Escherichia sp. 1_1_43], gi\|... gi\|254595169, gi... - gi\|254795769\|ref\|YP_003080606.1\| branched-chain amino-acid aminotransferase [Escherichia coli O157:H... gi\|187732296, gi... - gi\|75177665\|ref\|ZP_00697730.1\| COG0115: Branched-chain amino acid aminotransferase/4-amino-4-deoxych... gi\|157158223, gi... - gi\|75188519\|ref\|ZP_00701786.1\| COG0115: Branched-chain amino acid aminotransferase/4-amino-4-deoxych... gi\|194434628, gi... - gi\|83569048\|ref\|ZP_00920510.1\| COG0115: Branched-chain amino acid aminotransferase/4-amino-4-deoxych... ILVE_ECOLI - Branched-chain-amino-acid aminotransferase (EC 2.6.1.42) (Transaminase B) (BCAT) - Escherichia coli ILVE_ECOL6 - Branched-chain-amino-acid aminotransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / ... ILVE_ECO57 - Branched-chain-amino-acid aminotransferase OS=Escherichia coli O157:H7 GN=ilvE PE=3 SV=2 EG10497 - branched-chain amino acid aminotransferase / Branched-chain amino acid aminotransferase; transaminas...	0.0	[1..308]	[1..308]
gi\|110644100, gi... - gi\|110644100\|ref\|YP_671830.1\| branched-chain amino acid aminotransferase [Escherichia coli 536], gi\|... gi\|75236526, gi\|... - gi\|75236526\|ref\|ZP_00720616.1\| COG0115: Branched-chain amino acid aminotransferase/4-amino-4-deoxych... gi\|91213292, gi\|... - gi\|91213292\|ref\|YP_543278.1\| branched-chain amino acid aminotransferase [Escherichia coli UTI89], gi... gi\|117626033, gi... - gi\|117626033\|ref\|YP_859356.1\| branched-chain amino acid aminotransferase [Escherichia coli APEC O1],... gi\|237702781, gi... - gi\|237702781\|ref\|ZP_04533262.1\| branched-chain amino acid aminotransferase [Escherichia sp. 3_2_53FA... gi\|218692050, gi... - gi\|218692050\|ref\|YP_002400262.1\| branched-chain amino acid aminotransferase [Escherichia coli ED1a],... gi\|218367606, gi... - gi\|218560837\|ref\|YP_002393750.1\| branched-chain amino acid aminotransferase [Escherichia coli S88], ...	0.0	[1..308]	[1..308]
gi\|96710 - gi\|96710\|pir\|\|A34082 branched-chain-amino-acid transaminase (EC 2.6.1.42) - Salmonella typhimurium	0.0	[2..309]	[1..308]
gi\|75209007, gi\|... - gi\|75209007\|ref\|ZP_00709271.1\| COG0115: Branched-chain amino acid aminotransferase/4-amino-4-deoxych... gi\|194438594, gi... - gi\|83585975\|ref\|ZP_00924614.1\| COG0115: Branched-chain amino acid aminotransferase/4-amino-4-deoxych... gi\|254290465, gi... - gi\|254290465\|ref\|YP_003056213.1\| branched-chain amino acid aminotransferase [Escherichia coli BL21(D... gi\|242379303, gi... - gi\|251787030\|ref\|YP_003001334.1\| hypothetical protein B21_03597 [Escherichia coli BL21], gi\|24237930... gi\|254163715, gi... - gi\|254163715\|ref\|YP_003046823.1\| branched-chain amino acid aminotransferase [Escherichia coli B str.... gi\|75255777, gi\|... - gi\|75255777\|ref\|ZP_00727531.1\| COG0115: Branched-chain amino acid aminotransferase/4-amino-4-deoxych... gi\|190903852, gi... - gi\|75230738\|ref\|ZP_00717201.1\| COG0115: Branched-chain amino acid aminotransferase/4-amino-4-deoxych...	0.0	[1..308]	[1..308]
gi\|74314284, gi\|... - gi\|74314284\|ref\|YP_312703.1\| branched-chain amino acid aminotransferase [Shigella sonnei Ss046], gi\|...	0.0	[1..308]	[1..308]

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Predicted Domain #1

Region A:
Residues: [1-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTKKADYIW FNGEMVRWED AKVHVMSHAL HYGTSVFEGI RCYDSHKGPV VFRHREHMQR  60
   61 LRDSAKIYRF PVSQSIDELM EACRDVIRKN NLTSAYIRPL VFVGDVGMGV NPPPGYTTDV 120
  121 IIAAFPWGAY LGAEALDQGI DAMVSSWNRA APNTIPTAAK AGGNYLSSLL VGSEARRHGY 180
  181 QEGIALDVNG YISEGAGENL FEVKDGVLFT PPFTSSALPG ITRDAIIKLA KELGIEVREQ 240
  241 VLSRESLYLA DEVFMSGTAA EITPVRSVDG IQVGEGRCGP VTKRIQQAFF GLFTGETEDK 300
  301 WGWLDPVNS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	1i1kA
Description:	Branched-chain aminoacid aminotransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
branched-chain-amino-acid transaminase activity	5.31468228742342	bayes_pls_golite062009
L-alanine:2-oxoglutarate aminotransferase activity	2.72280299326621	bayes_pls_golite062009
alanine-oxo-acid transaminase activity	2.72280299326621	bayes_pls_golite062009
catalytic activity	2.42233634542616	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	2.24372201513675	bayes_pls_golite062009
transaminase activity	2.22194941712055	bayes_pls_golite062009
transferase activity	1.87055521105017	bayes_pls_golite062009
binding	1.1152974834671	bayes_pls_golite062009
pyridoxal phosphate binding	0.92252822492163	bayes_pls_golite062009
vitamin B6 binding	0.92252822492163	bayes_pls_golite062009
protein binding	0.120924367164485	bayes_pls_golite062009
cofactor binding	0.0813158351261423	bayes_pls_golite062009
vitamin binding	0.0806513488943901	bayes_pls_golite062009
steroid binding	0.026124581502876	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: