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View Structure Prediction Details

Protein: gi|190405370
Organism: Saccharomyces cerevisiae RM11-1a
Length: 153 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190405370.

Description E-value Query
Range
Subject
Range
gi|190405370 - gi|190405370|gb|EDV08637.1| central kinetochore subunit NKP2 [Saccharomyces cerevisiae RM11-1a]
NKP2 - Non-essential kinetochore protein, subunit of the Ctf19 central kinetochore complex (Ctf19p-Mcm21p-O...
NKP2_YEAST - Central kinetochore subunit NKP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NKP2 PE...
gi|151940846 - gi|151940846|gb|EDN59228.1| non-essential kinetochore protein [Saccharomyces cerevisiae YJM789]
9.0E-66 [1..153] [1..153]

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Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSEQLLHNY VSDSLLTTLI SFQEFKQQLQ SYTSDEQQLQ HWYELLQARD ARVTSELEAR  60
   61 IKQFFITLRS RLLRFLESEQ LSHSLSLETL IDALYKINDL LQQRLQILDD AIQEKTSELA 120
  121 EFENMVRSPS AGDNAIPGLL QIIQSYINLL EEN

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 8.32
Match: 1b68A
Description: Apolipoprotein E
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [85-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSLETLIDAL YKINDLLQQR LQILDDAIQE KTSELAEFEN MVRSPSAGDN AIPGLLQIIQ  60
   61 SYINLLEEN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle